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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044813 ID=TCONS_00044813|Name=TCONS_00044813|organism=Clytia hemisphaerica|type=transcript|length=1145bp
TTTGAAGGGGTAGCAGGTGGAGTTTTTGAAGGAGTGACATTCAGTAACAA
TGACCTTTTAGTGGCTTTAGTAGGAGTGTCAAATTCAAGAGCGGTGTTCA
GAAACGATGACTTTGCGGTGGCTTTTGTTGGAGTATTTTCCAAACTACCT
AATGGATTTGTAGATTCATTGGTACAGGTAGATTCCAAATCAGCAAGAGA
AGTCGATTCCATATCACTAGTCTTTGGACTAACCATATCGTATCTGACAA
TTAAACAAAGGTTATACATAAATTTACAATATATACAATAAATCATTTAC
AAAATTAGCTGGTTGTCAAGTTTTGATAGTGTTCTTTTGTTATTATTTGT
AATTGCTCAAGCCTATCTTGTTCTGCTTGCCTCATTTCATAAAGTTTAGA
TTGCTTTACCGCTTTTAATCTTTCAAATGAAAAGGGTTTTACCAAAacgt
tttccaatttttttaaacGAGATAATGCAACATATGCAAGCCCACAAACT
TTTTCTGTGTTACCTATATCAACAATAGCTTTATTTAAAGTTAGTCCTTG
AGATTTATGAATTGAAATAGCCCAACTCAATTTCAAAGGTATCTGAATTC
TTTCCAAGGAGGTTGACCTTTCAATTATTTCTGAAGTAACAGGTACAACT
GTAACACAATCTGGAAATCTAAGATCAAAAGTAGGCCCTGaataattttc
aaactcaactATTACTGCTATTGGCAGAATTGGTGGTGATTCGGATTCTT
TATAAATGATGTGCTGATGATAGCCCATTGAGCCATTACAAAGTCCAGCT
TCAGTCCACAAGTTTCTAGTTAACATTACCCTAGCACCCTCACAAATATT
CAATACAGGTTCTAGTCCTAAGTCCACACTTGATATTGATTTTGCTTTGG
AACAATTGTGTTTTGCATTTATTGTAAGTAAAGGGGAACCCATCTCTTTT
GATTTCTTGCNCTAGTCCTAAGTCCACACTTGATATTGATTTTGCTTTGG
AACAATTGTGTTTTGCATTTATTGTAAGTAAAGGGGAACCCAtctctttt
aatttcttgtaaTTAATTTCTGCTACCACATCATTAGTATAAGCAAGATT
CGGAGAAAAGCCACTGACAAAATCATCTGGGAAATTGTTTAAATT Run BLAST on NCBI protein sequence of TCONS_00044813-protein >TCONS_00044813-protein ID=TCONS_00044813-protein|Name=TCONS_00044813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MGSPLLTINAKHNCSKAKSISSVDLGLEPVLNICEGARVMLTRNLWTEAG
LCNGSMGYHQHIIYKESESPPILPIAVIVEFENYSGPTFDLRFPDCVTVV
PVTSEIIERSTSLERIQIPLKLSWAISIHKSQGLTLNKAIVDIGNTEKVC
GLAYVALSRLKKLENVLVKPFSFERLKAVKQSKLYEMRQAEQDRLEQLQI
ITKEHYQNLTTS Run BLAST on NCBI transcript from alignment at sc0006260:1025..2169 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044813 ID=TCONS_00044813|Name=TCONS_00044813|organism=Clytia hemisphaerica|type=transcript|length=1145bp|location=Sequence derived from alignment at sc0006260:1025..2169 (Clytia hemisphaerica)
AATTTAAACAATTTCCCAGATGATTTTGTCAGTGGCTTTTCTCCGAATCT
TGCTTATACTAATGATGTGGTAGCAGAAATTAAttacaagaaattaaaag
agaTGGGTTCCCCTTTACTTACAATAAATGCAAAACACAATTGTTCCAAA
GCAAAATCAATATCAAGTGTGGACTTAGGACTAGNGCAAGAAATCAAAAG
AGATGGGTTCCCCTTTACTTACAATAAATGCAAAACACAATTGTTCCAAA
GCAAAATCAATATCAAGTGTGGACTTAGGACTAGAACCTGTATTGAATAT
TTGTGAGGGTGCTAGGGTAATGTTAACTAGAAACTTGTGGACTGAAGCTG
GACTTTGTAATGGCTCAATGGGCTATCATCAGCACATCATTTATAAAGAA
TCCGAATCACCACCAATTCTGCCAATAGCAGTAATagttgagtttgaaaa
ttattCAGGGCCTACTTTTGATCTTAGATTTCCAGATTGTGTTACAGTTG
TACCTGTTACTTCAGAAATAATTGAAAGGTCAACCTCCTTGGAAAGAATT
CAGATACCTTTGAAATTGAGTTGGGCTATTTCAATTCATAAATCTCAAGG
ACTAACTTTAAATAAAGCTATTGTTGATATAGGTAACACAGAAAAAGTTT
GTGGGCTTGCATATGTTGCATTATCTCgtttaaaaaaattggaaaacgtT
TTGGTAAAACCCTTTTCATTTGAAAGATTAAAAGCGGTAAAGCAATCTAA
ACTTTATGAAATGAGGCAAGCAGAACAAGATAGGCTTGAGCAATTACAAA
TAATAACAAAAGAACACTATCAAAACTTGACAACCAGCTAATTTTGTAAA
TGATTTATTGTATATATTGTAAATTTATGTATAACCTTTGTTTAATTGTC
AGATACGATATGGTTAGTCCAAAGACTAGTGATATGGAATCGACTTCTCT
TGCTGATTTGGAATCTACCTGTACCAATGAATCTACAAATCCATTAGGTA
GTTTGGAAAATACTCCAACAAAAGCCACCGCAAAGTCATCGTTTCTGAAC
ACCGCTCTTGAATTTGACACTCCTACTAAAGCCACTAAAAGGTCATTGTT
ACTGAATGTCACTCCTTCAAAAACTCCACCTGCTACCCCTTCAAA Coding sequence (CDS) from alignment at sc0006260:1025..2169 >TCONS_00044813 ID=TCONS_00044813|Name=TCONS_00044813|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0006260:1025..2169 (Clytia hemisphaerica)
ATGGGTTCCCCTTTACTTACAATAAATGCAAAACACAATTGTTCCAAAGC
AAAATCAATATCAAGTGTGGACTTAGGACTAGAACCTGTATTGAATATTT
GTGAGGGTGCTAGGGTAATGTTAACTAGAAACTTGTGGACTGAAGCTGGA
CTTTGTAATGGCTCAATGGGCTATCATCAGCACATCATTTATAAAGAATC
CGAATCACCACCAATTCTGCCAATAGCAGTAATagttgagtttgaaaatt
attCAGGGCCTACTTTTGATCTTAGATTTCCAGATTGTGTTACAGTTGTA
CCTGTTACTTCAGAAATAATTGAAAGGTCAACCTCCTTGGAAAGAATTCA
GATACCTTTGAAATTGAGTTGGGCTATTTCAATTCATAAATCTCAAGGAC
TAACTTTAAATAAAGCTATTGTTGATATAGGTAACACAGAAAAAGTTTGT
GGGCTTGCATATGTTGCATTATCTCgtttaaaaaaattggaaaacgtTTT
GGTAAAACCCTTTTCATTTGAAAGATTAAAAGCGGTAAAGCAATCTAAAC
TTTATGAAATGAGGCAAGCAGAACAAGATAGGCTTGAGCAATTACAAATA
ATAACAAAAGAACACTATCAAAACTTGACAACCAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044813-exon-sc0006260-1491911889:1025..2169 | TCONS_00044813-exon-sc0006260-1491911889:1025..2169 | Clytia hemisphaerica | exon |
| TCONS_00044813-exon-sc0006260-1510915933:1025..2169 | TCONS_00044813-exon-sc0006260-1510915933:1025..2169 | Clytia hemisphaerica | exon |
| TCONS_00044813-exon-sc0006260-1575043694:1025..2169 | TCONS_00044813-exon-sc0006260-1575043694:1025..2169 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006260 | supercontig | sc0006260:1025..2169 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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