TCONS_00044811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044811
Unique NameTCONS_00044811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044811 ID=TCONS_00044811|Name=TCONS_00044811|organism=Clytia hemisphaerica|type=transcript|length=448bp
tttcaggctcagcattgttcttaaattgttcttatttgtAAGGCTTTGTT
GCCTGAAAGGACCCAAAACCATTTTCGAGTTAGGGAGACactcgagttat
agaggttccagttatggagactctactgtatatttttacttttaggtGGA
ATTATACTTGGTTTGTTGATGTGCGCCTTACTATATTTACTTAAAGAATG
GTATTCATCACATGTGTTGGTAGTGATCACCACGTGGCATTTCACAAGTC
TCTTTGTTTTGTTAACCAAGGACATCTCAAATGATGAGGAAAGAGAGCTT
GCAAGAACTAAGGTTTTTtattaattgttttctttttctgttaCTTATAC
AATTCTAAAGAGATTATATCGTAGACATCTGACAATTACAGGTATAGGAA
GAAATTTGCGATGAAAGTTACACAACCCCGGGTCGCAACAATATTTGT
Run BLAST on NCBI

transcript from alignment at sc0006251:68..515

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044811 ID=TCONS_00044811|Name=TCONS_00044811|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at sc0006251:68..515 (Clytia hemisphaerica)
ACAAATATTGTTGCGACCCGGGGTTGTGTAACTTTCATCGCAAATTTCTT
CCTATACCTGTAATTGTCAGATGTCTACGATATAATCTCTTTAGAATTGT
ATAAGtaacagaaaaagaaaacaattaataAAAAACCTTAGTTCTTGCAA
GCTCTCTTTCCTCATCATTTGAGATGTCCTTGGTTAACAAAACAAAGAGA
CTTGTGAAATGCCACGTGGTGATCACTACCAACACATGTGATGAATACCA
TTCTTTAAGTAAATATAGTAAGGCGCACATCAACAAACCAAGTATAATTC
Cacctaaaagtaaaaatatacagtagagtctccataactggaacctctat
aactcgagtGTCTCCCTAACTCGAAAATGGTTTTGGGTCCTTTCAGGCAA
CAAAGCCTTacaaataagaacaatttaagaacaatgctgagcctgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028420XLOC_028420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044811-exon-sc0006251-1491911889:68..515TCONS_00044811-exon-sc0006251-1491911889:68..515Clytia hemisphaericaexon
TCONS_00044811-exon-sc0006251-1510915933:68..515TCONS_00044811-exon-sc0006251-1510915933:68..515Clytia hemisphaericaexon
TCONS_00044811-exon-sc0006251-1575043694:68..515TCONS_00044811-exon-sc0006251-1575043694:68..515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006251supercontigsc0006251:68..515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148442	0.29299	1.1172	1.80877	1.80165	0.635178	0.830059	1.07201	1.25578	1.54944	0.451176	1.24456	8.02758	9.44379	0.252872	0.54274	1.22579	0.512823	20.2435	25.3929	1.0585	2.88336	0	0.773688	3.10768	3.2715	0.814176	0.958104	0	0.167864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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