TCONS_00044810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044810
Unique NameTCONS_00044810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044810 ID=TCONS_00044810|Name=TCONS_00044810|organism=Clytia hemisphaerica|type=transcript|length=464bp
GGGGTGAAATTTAGGTCCAGTATCGGTGATATCAAAAGTTCATGACTGAC
ATACCTGTAtgaagttttgaatttgaacattataaaatttattttttagc
aaCAACTTCCATTGAATCCAAAACCCTTTTTGAATGGACTGACCGGCAAG
GCAGTGATGGTCAAACTGAAATGGGGAATGGAGTACAAAGGTTATCTTGT
TTCAGTTGACAACTACATGAACATGCAGatcGCCAATTCAGAAGAATTTA
TTGATGGACAGATGACAGGAAATTTAGGAGAAATTTTGATAAGATGTAAC
AATGTTTTGTACATACGTGGTGTTGACGATGATGATGAGGGCGGTGATGG
AATGTAAGCGCCCCAACGCCCCTACACGGGAGAGAAAGATATTGTAAGAA
AAGACTTTTGGTAAACATTATTACAAAATTTGGAGATCTACAACACTATG
AGAGACAATATAAT
Run BLAST on NCBI

transcript from alignment at sc0006250:1..1380-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044810 ID=TCONS_00044810|Name=TCONS_00044810|organism=Clytia hemisphaerica|type=transcript|length=1380bp|location=Sequence derived from alignment at sc0006250:1..1380- (Clytia hemisphaerica)
GGGGTGAAATTTAGGTCCAGTATCGGTGATATCAAAAGTTCATGACTGAC
ATACCTGTATGAAGTTTTGAATTTGAACATTATAAAATTTATTTTTTAGC
AACAACTTCCATTGAATCCAAAACCCTTTTTGAATGGACTGACCGGCAAG
GCAGTGATGGTCAAACTGAAATGGGGAATGGAGTACAAAGGTTATCTTGT
TTCAGTTGACAACTACATGAACATGCAGGTATGAACTTCCTTCTGCTTCT
CTATAACATTTTTGTTTGAAAGATTCAGCTGCAGTGAAAATTTCAATCAC
TTTTTTGCGGTTGTTAAACTACCACAATACTCAATTTGAATTCAGTTTTA
AAACTCAATATTTGAAAAATTTTACTATTGTGTTAGCAACATGCCAAAGA
TTATGTAAGAAGTGGGGCAAAATAAAAAATTGTCCCGTTTTTTGATAAGC
AATCCTTGAAAAATAAACTTTTCACAGGGCATCAAAGGGGTCTTGTGACA
AATTTCAAGGCCTTTCATTGGTATTGATTGCTCCAAGAGGTTACGTAATT
GTTGGAAACTCAATTTTTAATGTGAAAAATGGCCAGTGCCAAAAGTGCTT
GAAATTTTTCCCGAGCTAGCATCTCTTGCCATGTACACGTTTTTAATAAG
CATACAGTAGGGTAAATTTTTGTAAGCCTTGTTATGCTTGGCAAAATGAA
TTTATGGAGTCTCGAATATATGTTTATACCATACTTATGGTGAATTTACA
CATTATGCAGGTTTTTTTTTGCAGTTTCGGAGATTAAATGCTTTGAAATT
TTGTAAACTAGGGCTCATCACATGCTTAGGCACTTGCTTAAGATCTTCTA
ATAGATTTGAGCCTGGACTTGCTTATAAGCGTTATGCATATAAAAAACGT
GTTCTTTAGCACTTTATTTCTTTTTTCAGATCGCCAATTCAGAAGAATTT
ATTGATGGACAGATGACAGGAAATTTAGGAGAAATTTTGATAAGGTATCT
ATTCTTCACCTAGATGATCTCCCTATACGAGCCCCCTCGAGTATTAAAAT
TTTCAAAAGATTTGGTGCTTAGTGTTTTTTGCCTGAGCCTACACATACTG
TTAATTGTTGATAAGCGTTGCTGAAAAACATTCCTTCGCTATGGGCAAGC
AAACATTTGAAACGTTTTTGCCAAAATGAATACATTCTAATATTTCTCTT
TTTATACAGATGTAACAATGTTTTGTACATACGTGGTGTTGACGATGATG
ATGAGGGCGGTGATGGAATGTAAGCGCCCCAACGCCCCTACACGGGAGAG
AAAGATATTGTAAGAAAAGACTTTTGGTAAACATTATTACAAAATTTGGA
GATCTACAACACTATGAGAGACAATATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028419XLOC_028419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044810-exon-sc0006250-1575043694:1153..1380TCONS_00044810-exon-sc0006250-1575043694:1153..1380Clytia hemisphaericaexon
TCONS_00044810-exon-sc0006250-1575043694:387..451TCONS_00044810-exon-sc0006250-1575043694:387..451Clytia hemisphaericaexon
TCONS_00044810-exon-sc0006250-1575043694:1..171TCONS_00044810-exon-sc0006250-1575043694:1..171Clytia hemisphaericaexon
TCONS_00044810-exon-sc0006250-1510915933:1153..1380TCONS_00044810-exon-sc0006250-1510915933:1153..1380Clytia hemisphaericaexon
TCONS_00044810-exon-sc0006250-1510915933:387..451TCONS_00044810-exon-sc0006250-1510915933:387..451Clytia hemisphaericaexon
TCONS_00044810-exon-sc0006250-1510915933:1..171TCONS_00044810-exon-sc0006250-1510915933:1..171Clytia hemisphaericaexon
TCONS_00044810-exon-sc0006250-1491911889:1153..1380TCONS_00044810-exon-sc0006250-1491911889:1153..1380Clytia hemisphaericaexon
TCONS_00044810-exon-sc0006250-1491911889:387..451TCONS_00044810-exon-sc0006250-1491911889:387..451Clytia hemisphaericaexon
TCONS_00044810-exon-sc0006250-1491911889:1..171TCONS_00044810-exon-sc0006250-1491911889:1..171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006250supercontigsc0006250:1..1380 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
308.708	312.795	437.232	458.549	519.845	405.787	427.214	442.502	237.324	184.733	194.664	213.806	161.646	172.069	178.237	206.868	247.499	228.77	61.3577	72.8276	182.954	182.856	167.029	151.692	242.087	247.578	134.384	99.6081	100.019	95.4908
Blast
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BLAST of TCONS_00044810 vs. Swiss-Prot (Human)
Match: RUXF (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.757e-40
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:  103 QLPLNPKPFLNGLTGKAVMVKLKWGMEYKGYLVSVDNYMNMQIANSEEFIDGQMTGNLGEILIRCNNVLYIR 318
             LPLNPKPFLNGLTGK VMVKLKWGMEYKGYLVSVD YMNMQ+AN+EE+IDG ++G+LGE+LIRCNNVLYIR
Sbjct:    2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIR 73
The following BLAST results are available for this feature:
BLAST of TCONS_00044810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RUXF8.757e-4084.72Small nuclear ribonucleoprotein F OS=Homo sapiens ... [more]
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