TCONS_00044803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044803
Unique NameTCONS_00044803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1026

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044803 ID=TCONS_00044803|Name=TCONS_00044803|organism=Clytia hemisphaerica|type=transcript|length=1026bp
GCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGACGAAAGTGA
TCTTCCGGAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGGACAC
AAACGATTACAACAGAAGATACTGAACCAGCCGAAGAACAACCACTACAA
AGTGCTTCATTCGTTATGCTCCAAGAACAATCTTTAGCTGTTGACGAAAG
TGATCTTCCGAAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGAA
CACAAACAATTACAACAGAAGATACTGAACCAGTCGAAGAACAACCACTA
CAAAGTGCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGACGA
AAGTGATCTTCCGGAAGAAGGCGACCTTCCAACAGTCAAATCTTTCACCA
GAACACAAATGATTACAACAGAAGATACTGAACCAGTGGAAGAACAACCA
CTACAAAGTGCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGA
CGAAAGTGATCTTCCTGAAGAAGGTGACCTACCAACAGTCAAATCTTTCA
CCAGGACACAAACAATTACAACAAAGGATACTGAACCACTCAAAGAACAA
CCACTACAAAGTGCTTCTTTTGTCGCGCTTCAAGAACAACCTTCAATTGT
TGACGAAAGTGATCTTCCGGAAGAAGGCGACCTACCAACAGCCAAATCTT
TCACCAGAACACAGACAATTATAACAGAAGATACTGAACCAGCCGAAGAA
CAACCACTACAAAGTGCTTCCTTTGTCGTGCTTCAAGAACAACCTTCAGC
TGTTGACGAAAGTGATCTTCCGGAAGAAGGTGACCTACCAACAGTCAAAT
CTTTCACCAGGACACAAACAATTACAACAGAAGATACTGAACCAGTCGAA
GAACAACCACTACAAAGTGCTTCATTCGTTATGCATCAAGAACAACCTTC
AATTGTAGACGAAAGTGATCTTCCAGAAGAAGGTGACCTACCAACAGTCA
AATCTTTCACCAGAACACAAACAATT
Run BLAST on NCBI

protein sequence of TCONS_00044803-protein

>TCONS_00044803-protein ID=TCONS_00044803-protein|Name=TCONS_00044803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
ASFVMLQEQPSIVDESDLPEEGDLPTVKSFTRTQTITTEDTEPAEEQPLQ
SASFVMLQEQSLAVDESDLPKEGDLPTVKSFTRTQTITTEDTEPVEEQPL
QSASFVMLQEQPSIVDESDLPEEGDLPTVKSFTRTQMITTEDTEPVEEQP
LQSASFVMLQEQPSIVDESDLPEEGDLPTVKSFTRTQTITTKDTEPLKEQ
PLQSASFVALQEQPSIVDESDLPEEGDLPTAKSFTRTQTIITEDTEPAEE
QPLQSASFVVLQEQPSAVDESDLPEEGDLPTVKSFTRTQTITTEDTEPVE
EQPLQSASFVMHQEQPSIVDESDLPEEGDLPTVKSFTRTQTI
Run BLAST on NCBI

transcript from alignment at sc0006241:1..2205+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044803 ID=TCONS_00044803|Name=TCONS_00044803|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at sc0006241:1..2205+ (Clytia hemisphaerica)
GCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGACGAAAGTGA
TCTTCCGGAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGGACAC
AAACGATTACAACAGAAGATACTGAACCAGCCGAAGAACAACCACTACAA
AGTGCTTCATTCGTTATGCTCCAAGAACAATCTTTAGCTGTTGACGAAAG
TGATCTTCCGAAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGAA
CACAAACAATTACAACAGAAGATACTGAACCAGTCGAAGAACAACCACTA
CAAAGTGCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGACGA
AAGTGATCTTCCGGAAGAAGGCGACCTTCCAACAGTCAAATCTTTCACCA
GAACACAAATGATTACAACAGAAGATACTGAACCAGTGGAAGAACAACCA
CTACAAAGTGCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGA
CGAAAGTGATCTTCCTGAAGAAGGTGACCTACCAACAGTCAAATCTTTCA
CCAGGACACAAACAATTACAACAAAGGATACTGAACCACTCAAAGAACAA
CCACTACAAAGTGCTTCTTTTGTCGCGCTTCAAGAACAACCTTCAATTGT
TGACGAAAGTGATCTTCCGGAAGAAGGCGACCTACCAACAGCCAAATCTT
TCACCAGAACACAGACAATTATAACAGAAGATACTGAACCAGCCGAAGAA
CAACCACTACAAAGTGCTTCCTTTGTCGTGCTTCAAGAACAACCTTCAGC
TGTTGACGAAAGTGATCTTCCGGAAGAAGGTGACCTACCAACAGTCAAAT
CTTTCACCAGAACACAGACAATTACAACAGAAGATACTGAACCAGTGGAA
GAAGAACCACTACAAAGTGCTTCTTTTGTCGTGCTTCAAGAACAACCTTC
AATTGTTGACAAAAGTGATCTTCCGAAAGAAGGTGACCTACCAACAGTCA
AATCTTTCACCAGGACACAAACAATTACAACAGAGGATACTGAACCACTC
AAAGAACAACCACTACAAAGTGCTTCTTTTGTCGTGCTTCAAGAACAACC
TTCAATTGTAGACGAAAGTGATCTTCCNTTCTTTTGTCGTGCTTCAAGAA
CAACCTTCAATTGTTGACGAAAGTGATCTTCCGGAAGAAGGCGACCTACC
AACAGCCAAATCTTTCACCAGGACACAAACAATTACAACAGAGGATACTG
AACCACTCAAAGAACAACCACTACAAAGTGTTTCTTTTGTCGTGCTTCAA
GAACAACCTTCAATTGTAGACGAAAGTGATCTTCCGGAAGAAGGTGACCT
ACCAACAGCCAAATCTTTCACCAGAACACAAACAATTACAACGGAagata
ctaaaccagtcaaagAACAACCACTACAAAGTGCTTCATTCGTTATGCTT
CAAGAACAATCTTTAGCTGTTGACGAAAGTGATCTTCCGAAAGAAGGTGA
CCTACCAACAGTCAAATCTTTCACCAGAACACAAACAATTACAACAGAAG
ATATTGAACCAGCCGAAGAACAACCACTACAAAGTGCTTCATTCGTTATG
CTTCAAGAACAACCTTCAATTGTTGACGAAAGTGATTTTCCTGAAGAAGG
TGACCTACCAACAGTCAAATCTTTCACCAGAACACAGACAATTATAACAG
AAGATACTGAACCAGTCGAAGAACAACCACTACAAAGTGCTTCATTCGTT
ATGCTTCAAGAACAACCTTCAATTGTAGACGAAAGTGATCTTCCAGAAGA
AGGTGACCTACCAACAGTCAAATCTTTCACCAGAACACAAACAATTACAA
CGGAAGATACTNACCAACAGTCAAATCTTTCACCAGAACACAAACAATTA
CAACGGAAGATACTGAACCAGCCGAAGAACAACCACTACAAAGTGCTTCA
TTCGTTATGCTTCAAGAACAACCTTCAATTGTTGACGAAAGTGATTTTCC
TGAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGGACACAAACAA
TTACAACAGAAGATACTGAACCAGTCGAAGAACAACCACTACAAAGTGCT
TCATTCGTTATGCATCAAGAACAACCTTCAATTGTAGACGAAAGTGATCT
TCCAGAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGAACACAAA
CAATT

Coding sequence (CDS) from alignment at sc0006241:1..2205+

>TCONS_00044803 ID=TCONS_00044803|Name=TCONS_00044803|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0006241:1..2205+ (Clytia hemisphaerica)
GCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGACGAAAGTGA
TCTTCCGGAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGGACAC
AAACGATTACAACAGAAGATACTGAACCAGCCGAAGAACAACCACTACAA
AGTGCTTCATTCGTTATGCTCCAAGAACAATCTTTAGCTGTTGACGAAAG
TGATCTTCCGAAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGAA
CACAAACAATTACAACAGAAGATACTGAACCAGTCGAAGAACAACCACTA
CAAAGTGCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGACGA
AAGTGATCTTCCGGAAGAAGGCGACCTTCCAACAGTCAAATCTTTCACCA
GAACACAAATGATTACAACAGAAGATACTGAACCAGTGGAAGAACAACCA
CTACAAAGTGCTTCATTCGTTATGCTTCAAGAACAACCTTCAATTGTAGA
CGAAAGTGATCTTCCTGAAGAAGGTGACCTACCAACAGTCAAATCTTTCA
CCAGGACACAAACAATTACAACAAAGGATACTGAACCACTCAAAGAACAA
CCACTACAAAGTGCTTCTTTTGTCGCGCTTCAAGAACAACCTTCAATTGT
TGACGAAAGTGATCTTCCGGAAGAAGGCGACCTACCAACAGCCAAATCTT
TCACCAGAACACAGACAATTATAACAGAAGATACTGAACCAGCCGAAGAA
CAACCACTACAAAGTGCTTCCTTTGTCGTGCTTCAAGAACAACCTTCAGC
TGTTGACGAAAGTGATCTTCCGGAAGAAGGTGACCTACCAACAGTCAAAT
CTTTCACCAGGACACAAACAATTACAACAGAAGATACTGAACCAGTCGAA
GAACAACCACTACAAAGTGCTTCATTCGTTATGCATCAAGAACAACCTTC
AATTGTAGACGAAAGTGATCTTCCAGAAGAAGGTGACCTACCAACAGTCA
AATCTTTCACCAGAACACAAACAATTGCTTCATTCGTTATGCTTCAAGAA
CAACCTTCAATTGTAGACGAAAGTGATCTTCCGGAAGAAGGTGACCTACC
AACAGTCAAATCTTTCACCAGGACACAAACGATTACAACAGAAGATACTG
AACCAGCCGAAGAACAACCACTACAAAGTGCTTCATTCGTTATGCTCCAA
GAACAATCTTTAGCTGTTGACGAAAGTGATCTTCCGAAAGAAGGTGACCT
ACCAACAGTCAAATCTTTCACCAGAACACAAACAATTACAACAGAAGATA
CTGAACCAGTCGAAGAACAACCACTACAAAGTGCTTCATTCGTTATGCTT
CAAGAACAACCTTCAATTGTAGACGAAAGTGATCTTCCGGAAGAAGGCGA
CCTTCCAACAGTCAAATCTTTCACCAGAACACAAATGATTACAACAGAAG
ATACTGAACCAGTGGAAGAACAACCACTACAAAGTGCTTCATTCGTTATG
CTTCAAGAACAACCTTCAATTGTAGACGAAAGTGATCTTCCTGAAGAAGG
TGACCTACCAACAGTCAAATCTTTCACCAGGACACAAACAATTACAACAA
AGGATACTGAACCACTCAAAGAACAACCACTACAAAGTGCTTCTTTTGTC
GCGCTTCAAGAACAACCTTCAATTGTTGACGAAAGTGATCTTCCGGAAGA
AGGCGACCTACCAACAGCCAAATCTTTCACCAGAACACAGACAATTATAA
CAGAAGATACTGAACCAGCCGAAGAACAACCACTACAAAGTGCTTCCTTT
GTCGTGCTTCAAGAACAACCTTCAGCTGTTGACGAAAGTGATCTTCCGGA
AGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGGACACAAACAATTA
CAACAGAAGATACTGAACCAGTCGAAGAACAACCACTACAAAGTGCTTCA
TTCGTTATGCATCAAGAACAACCTTCAATTGTAGACGAAAGTGATCTTCC
AGAAGAAGGTGACCTACCAACAGTCAAATCTTTCACCAGAACACAAACAA
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028412XLOC_028412Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044803-proteinTCONS_00044803-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044803-exon-sc0006241-1491911889:1..829TCONS_00044803-exon-sc0006241-1491911889:1..829Clytia hemisphaericaexon
TCONS_00044803-exon-sc0006241-1510915933:1..829TCONS_00044803-exon-sc0006241-1510915933:1..829Clytia hemisphaericaexon
TCONS_00044803-exon-sc0006241-1575043694:1..829TCONS_00044803-exon-sc0006241-1575043694:1..829Clytia hemisphaericaexon
TCONS_00044803-exon-sc0006241-1491911889:2009..2205TCONS_00044803-exon-sc0006241-1491911889:2009..2205Clytia hemisphaericaexon
TCONS_00044803-exon-sc0006241-1510915933:2009..2205TCONS_00044803-exon-sc0006241-1510915933:2009..2205Clytia hemisphaericaexon
TCONS_00044803-exon-sc0006241-1575043694:2009..2205TCONS_00044803-exon-sc0006241-1575043694:2009..2205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006241supercontigsc0006241:1..2205 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122035	0.112526	0.106244	0.0522873	2.83928	0.192263	0.298119	0.157773	0.315571	0.596035	0.267318	0.183991	5.23105	2.93421	0.215099	0.108168	0.389438	1.14455	5.65426	12.2791	1.08421	1.26538	0.180011	0	1.40371	2.65732	0	0.11311	0.0444381	0.174813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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