TCONS_00044797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044797
Unique NameTCONS_00044797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044797 ID=TCONS_00044797|Name=TCONS_00044797|organism=Clytia hemisphaerica|type=transcript|length=488bp
ttttttgttttgatgcgaAAGTTCAGGATTTTCGTTAACAAGAGTGTAAA
TGAGATCGTCTTTATTTTCGATTTGTTTTCTGAGGAAACCAATCTCATTT
TTCAAGTGATTCAAATATTCGTTATCTCCTTTTTCTGGATACTgtctaaa
ttttaagttttgatcAATTTTAAGTTGCTTAAGTTCACTGGTTACTGTTC
TTGTGATGAAGGATTTTACTTCCTCCATAATTTCCTTTTTCAAGTTGTTT
GTCTGTGCATTGAAaaattgttcgtcaatataagCTTCAGTATTCCTGAT
CTCTTTCTCAAAGCTGCTGTTATTTTCCATCTCGAAATGTTATACCAAAA
ATTGAACTTTATCTCAAGTACAACAAATAATCCAAATCCAGAAAAATTCA
GTTTAAATCCAgaagttaaaaacaaaaatcaaagccAAGaataccaaaat
tcaaaaatcaaaaatcaagttCCATCATCAGATTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00044797-protein

>TCONS_00044797-protein ID=TCONS_00044797-protein|Name=TCONS_00044797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MENNSSFEKEIRNTEAYIDEQFFNAQTNNLKKEIMEEVKSFITRTVTSEL
KQLKIDQNLKFRQYPEKGDNEYLNHLKNEIGFLRKQIENKDDLIYTLVNE
NPELSHQNKK
Run BLAST on NCBI

transcript from alignment at sc0006233:357..844

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044797 ID=TCONS_00044797|Name=TCONS_00044797|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0006233:357..844 (Clytia hemisphaerica)
CAAAAATCTGATGATGGaacttgatttttgatttttgaattttggtattC
TTggctttgatttttgtttttaacttcTGGATTTAAACTGAATTTTTCTG
GATTTGGATTATTTGTTGTACTTGAGATAAAGTTCAATTTTTGGTATAAC
ATTTCGAGATGGAAAATAACAGCAGCTTTGAGAAAGAGATCAGGAATACT
GAAGcttatattgacgaacaatttTTCAATGCACAGACAAACAACTTGAA
AAAGGAAATTATGGAGGAAGTAAAATCCTTCATCACAAGAACAGTAACCA
GTGAACTTAAGCAACTTAAAATTgatcaaaacttaaaatttagacAGTAT
CCAGAAAAAGGAGATAACGAATATTTGAATCACTTGAAAAATGAGATTGG
TTTCCTCAGAAAACAAATCGAAAATAAAGACGATCTCATTTACACTCTTG
TTAACGAAAATCCTGAACTTtcgcatcaaaacaaaaaa

Coding sequence (CDS) from alignment at sc0006233:357..844

>TCONS_00044797 ID=TCONS_00044797|Name=TCONS_00044797|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0006233:357..844 (Clytia hemisphaerica)
ATGGAAAATAACAGCAGCTTTGAGAAAGAGATCAGGAATACTGAAGctta
tattgacgaacaatttTTCAATGCACAGACAAACAACTTGAAAAAGGAAA
TTATGGAGGAAGTAAAATCCTTCATCACAAGAACAGTAACCAGTGAACTT
AAGCAACTTAAAATTgatcaaaacttaaaatttagacAGTATCCAGAAAA
AGGAGATAACGAATATTTGAATCACTTGAAAAATGAGATTGGTTTCCTCA
GAAAACAAATCGAAAATAAAGACGATCTCATTTACACTCTTGTTAACGAA
AATCCTGAACTTtcgcatcaaaacaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028408XLOC_028408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044797-exon-sc0006233-1491911889:357..844TCONS_00044797-exon-sc0006233-1491911889:357..844Clytia hemisphaericaexon
TCONS_00044797-exon-sc0006233-1510915933:357..844TCONS_00044797-exon-sc0006233-1510915933:357..844Clytia hemisphaericaexon
TCONS_00044797-exon-sc0006233-1575043694:357..844TCONS_00044797-exon-sc0006233-1575043694:357..844Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044797-proteinTCONS_00044797-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006233supercontigsc0006233:357..844 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.153052	0.214311	0	0	0.0846881	0	0	0	0.0774879	0	0.0978422	0.270349	0	0	0	0	0	0	0.36554	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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