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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044791 ID=TCONS_00044791|Name=TCONS_00044791|organism=Clytia hemisphaerica|type=transcript|length=1884bp
CTGGAGGAGTGCAAAATTTGTgaaggagagcagatttttatgacactatA
ATTTTCCAATAATaccatgaatagataattacagtgtcataaagatctgc
tctcctacacaaattttgcgcccctcttggctatGCTACTGCCCTAAACA
AATAACCCATATAACCCAAATAACATTTGCTATTATTAATAATGAGTTAT
TTAATGCATGGATTCAAATGACCAACTTTTTAGGTGTTTACTGGAACGCT
TTATCTGTTTCCAATTTGGCCTataaatcgttttttttttcttttctttt
agaaaTGCTTCATTATTGAGATCCTCCACACAAATCTTTAAATCACATCA
TCGATTTTGACCAAAAGACGAACCCGAAAAGACTGGCGTCATTGTTTTAA
CCCAATCGAAACGGCTTCATGTCCCATACaaatgttttgttgttgttttt
ttgcactttgGTCGAGTAGATTGTCGGGAAAATAGAATTTTGAAGGATAG
ATcttggagtttttgatttttttttaaagcgatgcattgtgggattgttt
tgggaccattacaatagaattccctcgaggaattcctaaaaGATTTATAT
TGTAaaactcccgaaacaatcccacaatgcatcgcttttttagaaaaatc
aaaaactctgatatgatctaccttatcggggaaaacttcgtcggggaaaa
gtgacgaaattttggacaagtgatgaatattttccccgacgaaaattttc
cccggccttaatgcgtttgccaactaccagcaagtgacgaaatttttccc
gacgaagttttccccgataaggtatttatcGACACTGAGGAAGAGGAGAA
GACTGACAAAACCATGAAATACTTGAAAACTTGGGAAACCGCTGATTCTT
TTTTGTTGTGCCCAGATCTCTAAATAACCCTGACAGTGAAATAAGCTATT
CATGCTACTCAGAAACGACGGACGCTTTTCAAATCTAGTACGGCGAATGA
GAAAATTAAAGCGATTTTACCCACGAAGAGGAAAATGTCGAGGTTTTATG
TGAAAATCTGGTATGACAGCCGACGTACCTGTCGTATCCGGTGCGTCGTG
CATGCATctgcccctaaaagcctagtatgaatagggttaagtgcGTTTTA
TAATATTTATGTTGTGTAAATAATTATTTGTTTTGtaagtttttaaatat
ttagcAAACTGATTCTCGGGTAGCGAGCACCTcgctaaaaaccgggattt
ttcatctcgtttcttagtgagttccactttgacgatttttaaaaagtaga
agcctttcaagtgctttgacgcaaattcgatttttttgctcttgcagcag
CTTCggaagttaaaagtgacgtcaaaaaatcgaatgtctAGAACCCGAAA
ACCCGgtctcaaaacatttgaaaaagtcgcaaagtggaatctGCAAAATC
AACCTGAAGATGAAGATCAACCGAGAAAATATGTTCCGCAGTTAACATAA
TAAGATAAGTTAATTTATAGATTTCACTGATGATTGCCATTCTGGTTGGC
ATGAAATTTTGAGTACGAAATTAACTTTAAATCGTTTAATTTACTCAAAC
TAGTATAAAGCTATGTTATCATTAACATTAAGCACTGTTATTGCCTTTGG
CTTACGCAAAGCATTCTGCAGATAACACTCATTTCACACCATTGCGCCGC
GAAAATGTTTCCCTTTAAAGAACTGTCGTGGTGTCAAATGGTTTGGATAC
GAGTTTGGTTAGTTTTGTCAGAATTTTAACCCTGTTTTCATCTCAAATTT
TCTATAAAATACGAATCGTCGGTAGACCTCGGCTCGAAATTTAAAGTTAT
CAAATAGTGAGCTTGGATGGTATGAAACTTTGAG Run BLAST on NCBI transcript from alignment at sc0006220:355..2238 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044791 ID=TCONS_00044791|Name=TCONS_00044791|organism=Clytia hemisphaerica|type=transcript|length=1884bp|location=Sequence derived from alignment at sc0006220:355..2238 (Clytia hemisphaerica)
CTCAAAGTTTCATACCATCCAAGCTCACTATTTGATAACTTTAAATTTCG
AGCCGAGGTCTACCGACGATTCGTATTTTATAGAAAATTTGAGATGAAAA
CAGGGTTAAAATTCTGACAAAACTAACCAAACTCGTATCCAAACCATTTG
ACACCACGACAGTTCTTTAAAGGGAAACATTTTCGCGGCGCAATGGTGTG
AAATGAGTGTTATCTGCAGAATGCTTTGCGTAAGCCAAAGGCAATAACAG
TGCTTAATGTTAATGATAACATAGCTTTATACTAGTTTGAGTAAATTAAA
CGATTTAAAGTTAATTTCGTACTCAAAATTTCATGCCAACCAGAATGGCA
ATCATCAGTGAAATCTATAAATTAACTTATCTTATTATGTTAACTGCGGA
ACATATTTTCTCGGTTGATCTTCATCTTCAGGTTGATTTTGCagattcca
ctttgcgactttttcaaatgttttgagacCGGGTTTTCGGGTTCTagaca
ttcgattttttgacgtcacttttaacttccGAAGctgctgcaagagcaaa
aaaatcgaatttgcgtcaaagcacttgaaaggcttctactttttaaaaat
cgtcaaagtggaactcactaagaaacgagatgaaaaatcccggtttttag
cgAGGTGCTCGCTACCCGAGAATCAGTTTgctaaatatttaaaaacttaC
AAAACAAATAATTATTTACACAACATAAATATTATAAAACgcacttaacc
ctattcatactaggcttttaggggcagATGCATGCACGACGCACCGGATA
CGACAGGTACGTCGGCTGTCATACCAGATTTTCACATAAAACCTCGACAT
TTTCCTCTTCGTGGGTAAAATCGCTTTAATTTTCTCATTCGCCGTACTAG
ATTTGAAAAGCGTCCGTCGTTTCTGAGTAGCATGAATAGCTTATTTCACT
GTCAGGGTTATTTAGAGATCTGGGCACAACAAAAAAGAATCAGCGGTTTC
CCAAGTTTTCAAGTATTTCATGGTTTTGTCAGTCTTCTCCTCTTCCTCAG
TGTCgataaataccttatcggggaaaacttcgtcgggaaaaatttcgtca
cttgctggtagttggcaaacgcattaaggccggggaaaattttcgtcggg
gaaaatattcatcacttgtccaaaatttcgtcacttttccccgacgaagt
tttccccgataaggtagatcatatcagagtttttgatttttctaaaaaag
cgatgcattgtgggattgtttcgggagtttTACAATATAAATCttttagg
aattcctcgagggaattctattgtaatggtcccaaaacaatcccacaatg
catcgctttaaaaaaaaatcaaaaactccaagATCTATCCTTCAAAATTC
TATTTTCCCGACAATCTACTCGACcaaagtgcaaaaaaacaacaacaaaa
catttGTATGGGACATGAAGCCGTTTCGATTGGGTTAAAACAATGACGCC
AGTCTTTTCGGGTTCGTCTTTTGGTCAAAATCGATGATGTGATTTAAAGA
TTTGTGTGGAGGATCTCAATAATGAAGCAtttctaaaagaaaagaaaaaa
aaaacgatttatAGGCCAAATTGGAAACAGATAAAGCGTTCCAGTAAACA
CCTAAAAAGTTGGTCATTTGAATCCATGCATTAAATAACTCATTATTAAT
AATAGCAAATGTTATTTGGGTTATATGGGTTATTTGTTTAGGGCAGTAGC
atagccaagaggggcgcaaaatttgtgtaggagagcagatctttatgaca
ctgtaattatctattcatggtATTATTGGAAAATTatagtgtcataaaaa
tctgctctccttcACAAATTTTGCACTCCTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044791-exon-sc0006220-1491911889:355..2238 | TCONS_00044791-exon-sc0006220-1491911889:355..2238 | Clytia hemisphaerica | exon |
| TCONS_00044791-exon-sc0006220-1510915933:355..2238 | TCONS_00044791-exon-sc0006220-1510915933:355..2238 | Clytia hemisphaerica | exon |
| TCONS_00044791-exon-sc0006220-1575043694:355..2238 | TCONS_00044791-exon-sc0006220-1575043694:355..2238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006220 | supercontig | sc0006220:355..2238 . |
Blast
The following BLAST results are available for this feature:
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