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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044782 ID=TCONS_00044782|Name=TCONS_00044782|organism=Clytia hemisphaerica|type=transcript|length=886bp
CATGTGAGTTTCATGATACGCAGGATGAAATCGTCGACCAAGTAATCGGT
GGATGCAACTCAAAGAAATTGAGAAAACGATTATTGAAAGAACATAACct
atctttagacaaattgttAGAAATTGCTCTTGTCTTAGAAACCGCTGATC
ACCAATCCGTCAAATATGACACTGACAAACCGCATCAACATAATAAACCT
GTTGAGGAGGAATCCGATGATTGCGATGGAGACAACGTCAACAGAATTTC
TGACCGTCGACCGCCACGTTATCCTAAAAGTAGAATATCGAAAACACCAC
ATACTACCAGAAAACTAACATGTTATCGTTGTGGAAGTGATCACTTAGCA
TCTGAATGCAGAATCGCCAAAGACAAGACATGTTTCAATTGTGGAAAAAA
GGGACACTTAAAAACAGTATGTCAGTCAAAACAAAACCCTAACCAGCAAG
ATAACCCAACGATACGTTACATCGCAGTTGAAGATTCATCCTCTGATGAT
GAATTCGTATTAGCAATNccaggattagaaaaagctatacctgttatctt
ttttctttaaagaatcaacaagccatcaacatcgataaattacacacatt
ccctcagaaacttttaaattatctgccattatgactttcttgaagccgtt
ccgaaataaaccaatcgggttaggtattggaattcctatgggagttcttt
tccgagatttgtaaaatagctaagtcagcaaaaaaacttttcccgggggt
ttgaagaataaacagaactgttatcattcgttttttatttaaccgtatat
ttaaatttgtgctgaaaaatactttaataaataagttaataatattcaaa
tatactatttgtatctctcagaaaataaacacttac Run BLAST on NCBI protein sequence of TCONS_00044782-protein >TCONS_00044782-protein ID=TCONS_00044782-protein|Name=TCONS_00044782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
CEFHDTQDEIVDQVIGGCNSKKLRKRLLKEHNLSLDKLLEIALVLETADH
QSVKYDTDKPHQHNKPVEEESDDCDGDNVNRISDRRPPRYPKSRISKTPH
TTRKLTCYRCGSDHLASECRIAKDKTCFNCGKKGHLKTVCQSKQNPNQQD
NPTIRYIAVEDSSSDDEFVLAXPGLEKAIPVIFFL Run BLAST on NCBI transcript from alignment at sc0006206:517..1402 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044782 ID=TCONS_00044782|Name=TCONS_00044782|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at sc0006206:517..1402 (Clytia hemisphaerica)
gtaagtgtttattttctgagagatacaaatagtatatttgaatattatta
acttatttattaaagtatttttcagcacaaatttaaatatacggttaaat
aaaaaacgaatgataacagttctgtttattcttcaaacccccgggaaaag
tttttttgctgacttagctattttacaaatctcggaaaagaactcccata
ggaattccaatacctaacccgattggtttatttcggaacggcttcaagaa
agtcataatggcagataatttaaaagtttctgagggaatgtgtgtaattt
atcgatgttgatggcttgttgattctttaaagaaaaaagataacaggtat
agctttttctaatcctggNATTGCTAATACGAATTCATCATCAGAGGATG
AATCTTCAACTGCGATGTAACGTATCGTTGGGTTATCTTGCTGGTTAGGG
TTTTGTTTTGACTGACATACTGTTTTTAAGTGTCCCTTTTTTCCACAATT
GAAACATGTCTTGTCTTTGGCGATTCTGCATTCAGATGCTAAGTGATCAC
TTCCACAACGATAACATGTTAGTTTTCTGGTAGTATGTGGTGTTTTCGAT
ATTCTACTTTTAGGATAACGTGGCGGTCGACGGTCAGAAATTCTGTTGAC
GTTGTCTCCATCGCAATCATCGGATTCCTCCTCAACAGGTTTATTATGTT
GATGCGGTTTGTCAGTGTCATATTTGACGGATTGGTGATCAGCGGTTTCT
AAGACAAGAGCAATTTCTaacaatttgtctaaagatagGTTATGTTCTTT
CAATAATCGTTTTCTCAATTTCTTTGAGTTGCATCCACCGATTACTTGGT
CGACGATTTCATCCTGCGTATCATGAAACTCACATG Coding sequence (CDS) from alignment at sc0006206:517..1402 >TCONS_00044782 ID=TCONS_00044782|Name=TCONS_00044782|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0006206:517..1402 (Clytia hemisphaerica)
ttaaagaaaaaagataacaggtatagctttttctaatcctggNATTGCTA
ATACGAATTCATCATCAGAGGATGAATCTTCAACTGCGATGTAACGTATC
GTTGGGTTATCTTGCTGGTTAGGGTTTTGTTTTGACTGACATACTGTTTT
TAAGTGTCCCTTTTTTCCACAATTGAAACATGTCTTGTCTTTGGCGATTC
TGCATTCAGATGCTAAGTGATCACTTCCACAACGATAACATGTTAGTTTT
CTGGTAGTATGTGGTGTTTTCGATATTCTACTTTTAGGATAACGTGGCGG
TCGACGGTCAGAAATTCTGTTGACGTTGTCTCCATCGCAATCATCGGATT
CCTCCTCAACAGGTTTATTATGTTGATGCGGTTTGTCAGTGTCATATTTG
ACGGATTGGTGATCAGCGGTTTCTAAGACAAGAGCAATTTCTaacaattt
gtctaaagatagGTTATGTTCTTTCAATAATCGTTTTCTCAATTTCTTTG
AGTTGCATCCACCGATTACTTGGTCGACGATTTCATCCTGCGTATCATGA
AACTCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044782-exon-sc0006206-1491911889:517..1402 | TCONS_00044782-exon-sc0006206-1491911889:517..1402 | Clytia hemisphaerica | exon |
| TCONS_00044782-exon-sc0006206-1510915933:517..1402 | TCONS_00044782-exon-sc0006206-1510915933:517..1402 | Clytia hemisphaerica | exon |
| TCONS_00044782-exon-sc0006206-1575043694:517..1402 | TCONS_00044782-exon-sc0006206-1575043694:517..1402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006206 | supercontig | sc0006206:517..1402 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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