TCONS_00044779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044779
Unique NameTCONS_00044779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044779 ID=TCONS_00044779|Name=TCONS_00044779|organism=Clytia hemisphaerica|type=transcript|length=472bp
CAGAAGAGGAGACCTAAACCAGGCCAAGTCAAGATGGCAGACCTACCTGT
CGACAGAATAACTGTGGGAGCCCCAACGTTCTTCCACACCGGAGTAGATT
TCTTTGGACCAATTCAAGTGAGGGTCCTGAGAAGCAAAGTCAAGCGATGG
GGATGTCTGTTTACATGTCTTGTCACTAGAGCTGTGCATATTGAAGTTTC
ACCATCATTAGAAGCTGACGATTTCATTAATGTTCTGGACCGATTTATCA
ACAGAAGAGGAAATCCAGAGATAATCCGTTCTGATTGTGGTACTAATTTC
AAAGGCGCGTCAAACGAGTTAAAGAAAGAAATCGAACGAATGGATCAGCT
CAAGATTGCCAAGTCATTGCAAAGAAAGGAGATCAAGTGGCATTTCAATC
CACCAGAAGCACCTCATATGGGAGGTGTTTGGGAACGTCTGATTCAAAGT
GTCAAGATAACGCTGAGTGTCA
Run BLAST on NCBI

protein sequence of TCONS_00044779-protein

>TCONS_00044779-protein ID=TCONS_00044779-protein|Name=TCONS_00044779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
QKRRPKPGQVKMADLPVDRITVGAPTFFHTGVDFFGPIQVRVLRSKVKRW
GCLFTCLVTRAVHIEVSPSLEADDFINVLDRFINRRGNPEIIRSDCGTNF
KGASNELKKEIERMDQLKIAKSLQRKEIKWHFNPPEAPHMGGVWERLIQS
VKITLSV
Run BLAST on NCBI

transcript from alignment at sc0006200:1602..2073

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044779 ID=TCONS_00044779|Name=TCONS_00044779|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0006200:1602..2073 (Clytia hemisphaerica)
TGACACTCAGCGTTATCTTGACACTTTGAATCAGACGTTCCCAAACACCT
CCCATATGAGGTGCTTCTGGTGGATTGAAATGCCACTTGATCTCCTTTCT
TTGCAATGACTTGGCAATCTTGAGCTGATCCATTCGTTCGATTTCTTTCT
TTAACTCGTTTGACGCGCCTTTGAAATTAGTACCACAATCAGAACGGATT
ATCTCTGGATTTCCTCTTCTGTTGATAAATCGGTCCAGAACATTAATGAA
ATCGTCAGCTTCTAATGATGGTGAAACTTCAATATGCACAGCTCTAGTGA
CAAGACATGTAAACAGACATCCCCATCGCTTGACTTTGCTTCTCAGGACC
CTCACTTGAATTGGTCCAAAGAAATCTACTCCGGTGTGGAAGAACGTTGG
GGCTCCCACAGTTATTCTGTCGACAGGTAGGTCTGCCATCTTGACTTGGC
CTGGTTTAGGTCTCCTCTTCTG

Coding sequence (CDS) from alignment at sc0006200:1602..2073

>TCONS_00044779 ID=TCONS_00044779|Name=TCONS_00044779|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0006200:1602..2073 (Clytia hemisphaerica)
GACACTCAGCGTTATCTTGACACTTTGAATCAGACGTTCCCAAACACCTC
CCATATGAGGTGCTTCTGGTGGATTGAAATGCCACTTGATCTCCTTTCTT
TGCAATGACTTGGCAATCTTGAGCTGATCCATTCGTTCGATTTCTTTCTT
TAACTCGTTTGACGCGCCTTTGAAATTAGTACCACAATCAGAACGGATTA
TCTCTGGATTTCCTCTTCTGTTGATAAATCGGTCCAGAACATTAATGAAA
TCGTCAGCTTCTAATGATGGTGAAACTTCAATATGCACAGCTCTAGTGAC
AAGACATGTAAACAGACATCCCCATCGCTTGACTTTGCTTCTCAGGACCC
TCACTTGAATTGGTCCAAAGAAATCTACTCCGGTGTGGAAGAACGTTGGG
GCTCCCACAGTTATTCTGTCGACAGGTAGGTCTGCCATCTTGACTTGGCC
TGGTTTAGGTCTCCTCTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028390XLOC_028390Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044779-exon-sc0006200-1491911889:1602..2073TCONS_00044779-exon-sc0006200-1491911889:1602..2073Clytia hemisphaericaexon
TCONS_00044779-exon-sc0006200-1510915933:1602..2073TCONS_00044779-exon-sc0006200-1510915933:1602..2073Clytia hemisphaericaexon
TCONS_00044779-exon-sc0006200-1575043694:1602..2073TCONS_00044779-exon-sc0006200-1575043694:1602..2073Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044779-proteinTCONS_00044779-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006200supercontigsc0006200:1602..2073 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.23955	3.59825	0.989543	0.896573	0.727661	0.287504	0.520292	1.27314	0.113675	0.563217	0.820009	0	0.358861	0.231899	0.153197	0.368373	0.101266	0.269078	0.143398	0.450166	0.480954	0	0	0.682088	0.641864	0.517037	0.736893	0.394809	0.299449	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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