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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044752 ID=TCONS_00044752|Name=TCONS_00044752|organism=Clytia hemisphaerica|type=transcript|length=722bp
TTAATAATATCTTAGATATGCTGCATTCAAGAAATACTTCCCAGATGCTC
AAACTGCTGACGAAGAGCTTCAAGAATTCGTGCGAAATGCATCTTTAATC
AAAGTTATAGTCGATAAAATGGCATTCTCCGATTCCATTAAAGAATTAAT
TTATGCAATCGGTACCGAAGCAGATGTTGGGCAGTTGGTTATTGAAATGT
TTCGACAGCAAGATCATCCAGAGGCACTCGGCCCAGCTGATATGATACTT
CTTTTGAGTGACACCATCCGAACAACGCCTGATTATGTCGATAATGAATC
AGACATTCAAATCCCATGTCCAGTTGGTGCCCTTTTGACATACGCCATGG
TTACTCCTGCTGGATATGCCGCATTCTTGAAAAGACGTGTAAACGAGCTC
TTCAGGAATATCTTGAATGATTACCAAAAGAACTNTGCATTCTTGAAAAG
ACGTGTAAACGAACTCTTCAGGAATATCTTGAATGATTACCAAAAGAACT
GGTTGTTAACATCAAATTCAGTTGATAAACTTGCTGACGTTGAAAATGGT
TGGTTTACACCACTCGCCCTTTCAGAGATGCCTAATTTTGACGATGACTT
TGTATGTGATCCTAACGCCCCACATAAAGGATTTAaatcatttgatgatt
ttttcacacGAGACTTGAAAAAAGGTGCCAGACCAGTAGGTGGTGAAGAT
GACCCAAATGTTGTTGTAAATG Run BLAST on NCBI protein sequence of TCONS_00044752-protein >TCONS_00044752-protein ID=TCONS_00044752-protein|Name=TCONS_00044752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MAFSDSIKELIYAIGTEADVGQLVIEMFRQQDHPEALGPADMILLLSDTI
RTTPDYVDNESDIQIPCPVGALLTYAMVTPAGYAAFLKRRVNELFRNILN
DYQKNXAFLKRRVNELFRNILNDYQKNWLLTSNSVDKLADVENGWFTPLA
LSEMPNFDDDFVCDPNAPHKGFKSFDDFFTRDLKKGARPVGGEDDPNVVV
N Run BLAST on NCBI transcript from alignment at sc0006142:17..2475+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044752 ID=TCONS_00044752|Name=TCONS_00044752|organism=Clytia hemisphaerica|type=transcript|length=2459bp|location=Sequence derived from alignment at sc0006142:17..2475+ (Clytia hemisphaerica)
TTAATAATATCTTAGATATGCTGCATTCAAGAAATACTTCCCAGATGCTC
AAACTGCTGACGAAGAGCTTCAAGAATTCGTGCGAAATGCATCTTTAATC
AAAGTTATAGTCGATAAAATGGCATTCTCCGATTCCATTAAAGAATTAAT
TTATGCAATCGGTACCGAAGCAGATGTTGGGCAGTTGGTTATTGAAATGT
TTCGACAGCAAGATCATCCAGAGGCACTCGGCCCAGCTGATATGATACTT
CTTTTGAGTGACACCATCCGAACAACGCCTGATTATGTCGATAATGAATC
AGGTACGAAtagcaatttttttcaataacaGTAAACATCTTTGcaggatt
ttttcattttgtttaatatgaatttttttaataacgGGGGAAAACTACAC
TTAGATTTCTTTCCTCCTGACACTCTGGGACTTCTTACTGGTGCTTTGAG
CtgtaatacacccctgtgtcacggTTCCAACCccactcgggtaacttaat
gcatgtcacagaattgcattaatttttccgccccagttccagtccctaaa
ccataacaaactatacatttttggaagcgtatttggatgtagaataccgt
attcggtgtaacttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattcggtgtaacttaaatt
ctttctcagtataattagagatatgttaaaaaaacctgattatgacgtca
tgattgatgacgtcataaatacaaaaagttgaagatcttgagaaatataa
atcaatgctttatgaaatttggaccagtgataaagtacattgaaatgttt
caaaaacttttaaaagtatttcccaaaattaatgacgtcagcaaaaattg
caagaattcgaatttttgcgataaaatgctgacatcagcaaattttcaaa
ttttttgaaaaaaattctccttctttagatgagttctatcattggtcaaa
atttcataaagatttgagtattagttcttgagatattcaatttttaaaaa
ttatgacgtcaaaaataatgacgtcataatcatgttttcttaaaaaaact
caaattctgctgagaaagaatttaagttacaccaaatacggtattctaca
tccaaatacgcttccaaaaatgtatagtttgttatggtttagggactgga
actggggcggaataattaatgcaattctgggacatgcattaagttacccg
agcagtggaaaatttggaaaagaattcgtccccggtgggaaaaacaCCCT
AGAATTTCAACCCACTGAGAGATTGACCTTGATTTTATCCCTATtcgaaa
ttgttaaaaattggactccaaaaccattcccactgaaatttttaacattg
gaacaatagaatttttgtcaccattgagatttcaatccaaatctttatcc
ccactgtAAGAAAATTTCACCgtggctgtgagacaggggtgttgtaaTTA
ATATGATTTAAAATCTCAACTGTAAAAATATCCTTTTCCAATGATAAAAG
ATATCCTTTTCCAATGATAAAAGAAAGAAGGTGTGCGTATTCGCACGAAC
ACCACTTGCCTTGTATTCAAAAAATTACCATGGTTATTGTCCctcgaaaa
atgaaataactttttataaatagaaattaGTTTTAAAATCCGGTGGGAGT
TAATCAttatggcaataatttcaaaaggaGATAAAGTgatgctcgtgacg
taatttatgaaaaggtctatcaatGATATGATTTTCTCAAGTTGTGTGCT
AGCGCAGCGCAGGAGTAAAAAAAGTTGTCATTTCCTTTGTTTAATAAttc
tgtgtaagcaaatggtaggagattTAAAACTTTAAATCATGTCCTTAAGA
CATTTTCAATCCATGCATATTAGCTCAACAATTTTCCTCTCGCCGGATCA
CAAGATAAGGGTATAAAAGACCGTGTACTGGCTTTAGTTTAATCCTATTA
AATGATAATTACATTACACAATTTCATCCTCTTTTACAGACATTCAAATC
CCATGTCCAGTTGGTGCCCTTTTGACATACGCCATGGTTACTCCTGCTGG
ATATGCCGCATTCTTGAAAAGACGTGTAAACGAGCTCTTCAGGAATATCT
TGAATGATTACCAAAAGAACTNTGCATTCTTGAAAAGACGTGTAAACGAA
CTCTTCAGGAATATCTTGAATGATTACCAAAAGAACTGGTTGTTAACATC
AAATTCAGTTGATAAACTTGCTGACGTTGAAAATGGTTGGTTTACACCAC
TCGCCCTTTCAGAGATGCCTAATTTTGACGATGACTTTGTATGTGATCCT
AACGCCCCACATAAAGGATTTAaatcatttgatgattttttcacacGAGA
CTTGAAAAAAGGTGCCAGACCAGTAGGTGGTGAAGATGACCCAAATGTTG
TTGTAAATG Coding sequence (CDS) from alignment at sc0006142:17..2475+ >TCONS_00044752 ID=TCONS_00044752|Name=TCONS_00044752|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0006142:17..2475+ (Clytia hemisphaerica)
ATGGCATTCTCCGATTCCATTAAAGAATTAATTTATGCAATCGGTACCGA
AGCAGATGTTGGGCAGTTGGTTATTGAAATGTTTCGACAGCAAGATCATC
CAGAGGCACTCGGCCCAGCTGATATGATACTTCTTTTGAGTGACACCATC
CGAACAACGCCTGATTATGTCGATAATGAATCAGACATTCAAATCCCATG
TCCAGTTGGTGCCCTTTTGACATACGCCATGGTTACTCCTGCTGGATATG
CCGCATTCTTGAAAAGACGTGTAAACGAGCTCTTCAGGAATATCTTGAAT
GATTACCAAAAGAACTNTGCATTCTTGAAAAGACGTGTAAACGAACTCTT
CAGGAATATCTTGAATGATTACCAAAAGAACTGGTTGTTAACATCAAATT
CAGTTGATAAACTTGCTGACGTTGAAAATGGTTGGTTTACACCACTCGCC
CTTTCAGAGATGCCTAATTTTGACGATGACTTTGTATGTGATCCTAACGC
CCCACATAAAGGATTTAaatcatttgatgattttttcacacGAGACTTGA
AAAAAGGTGCCAGACCAGTAGGTGGTGAAGATGACCCAAATGTTGTTGTA
AATATGGCATTCTCCGATTCCATTAAAGAATTAATTTATGCAATCGGTAC
CGAAGCAGATGTTGGGCAGTTGGTTATTGAAATGTTTCGACAGCAAGATC
ATCCAGAGGCACTCGGCCCAGCTGATATGATACTTCTTTTGAGTGACACC
ATCCGAACAACGCCTGATTATGTCGATAATGAATCAGACATTCAAATCCC
ATGTCCAGTTGGTGCCCTTTTGACATACGCCATGGTTACTCCTGCTGGAT
ATGCCGCATTCTTGAAAAGACGTGTAAACGAGCTCTTCAGGAATATCTTG
AATGATTACCAAAAGAACTNTGCATTCTTGAAAAGACGTGTAAACGAACT
CTTCAGGAATATCTTGAATGATTACCAAAAGAACTGGTTGTTAACATCAA
ATTCAGTTGATAAACTTGCTGACGTTGAAAATGGTTGGTTTACACCACTC
GCCCTTTCAGAGATGCCTAATTTTGACGATGACTTTGTATGTGATCCTAA
CGCCCCACATAAAGGATTTAaatcatttgatgattttttcacacGAGACT
TGAAAAAAGGTGCCAGACCAGTAGGTGGTGAAGATGACCCAAATGTTGTT
GTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044752-exon-sc0006142-1491911889:17..318 | TCONS_00044752-exon-sc0006142-1491911889:17..318 | Clytia hemisphaerica | exon |
| TCONS_00044752-exon-sc0006142-1510915933:17..318 | TCONS_00044752-exon-sc0006142-1510915933:17..318 | Clytia hemisphaerica | exon |
| TCONS_00044752-exon-sc0006142-1575043694:17..318 | TCONS_00044752-exon-sc0006142-1575043694:17..318 | Clytia hemisphaerica | exon |
| TCONS_00044752-exon-sc0006142-1491911889:2056..2475 | TCONS_00044752-exon-sc0006142-1491911889:2056..2475 | Clytia hemisphaerica | exon |
| TCONS_00044752-exon-sc0006142-1510915933:2056..2475 | TCONS_00044752-exon-sc0006142-1510915933:2056..2475 | Clytia hemisphaerica | exon |
| TCONS_00044752-exon-sc0006142-1575043694:2056..2475 | TCONS_00044752-exon-sc0006142-1575043694:2056..2475 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006142 | supercontig | sc0006142:17..2475 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR022237 | PSDC |
Blast
The following BLAST results are available for this feature:
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