TCONS_00044738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044738
Unique NameTCONS_00044738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044738 ID=TCONS_00044738|Name=TCONS_00044738|organism=Clytia hemisphaerica|type=transcript|length=311bp
CTATCTTTGAAAAGTGATCGTGACGAATCAGGTTATGGGAATGTGATCTC
TAACGCGACAATTTCCAAGATCGCTTTCCCTTCCATCAGAATTGGATGGT
TGGAAGCAACTACCACTCTCGTCAAGCAGCTTTGTTTATAGTAAGTTTTC
GTTTATAACCCATTGTTTATCGAGCTAGGCGACCNCCTTTCTTTCGAAGC
TACTTTTCCTGGCCGCCCCAGTCAACGCGAGTATAGATAAATTGTCAGCA
TCTGTACTGAACTTACGGAAAGAAGAGAAGAACTTGATACTGGTCAAAAC
GAAAATGTAAG
Run BLAST on NCBI

transcript from alignment at sc0006117:732..1603-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044738 ID=TCONS_00044738|Name=TCONS_00044738|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0006117:732..1603- (Clytia hemisphaerica)
CTATCTTTGAAAAGTGATCGTGACGAATCAGGTTATGGGAATGTGATCTC
TAACGCGACAATTTCCAAGATCGCTTTCCCTTCCATCAGAATTGGATGGT
TGGAAGCAACTACCACTCTCGTCAAGCAGCTTTGTTTATAGTAAGTTTTC
GTTTATAACCCATTGTTTATCGAGCTAGGCGACCNCCTTTCTTTCGAAGC
TACTTTTCCTGGCCGCCCCAGTCAACGCGAGTATAGATAGTATGCGCTTT
CATTCGTTTTAATTTAAGATATTTGAATTTTGTTGTTTGTTGTTTGTTGC
TATTTCCTTTTTTCAGGGGTTATAGTCATATTTAGCAGTGGTGGATCTGG
AGTAGGAAAGTTTCGAAATTTATGCCGGAAGTCTTCATTTCCTTATAAAA
GAAACACTCTCTGTCATATGTTTTGAACCGCCCCTCCCCCTCAGATCCGC
CACTGTTTAAAGTAATGGTTCTTTTGTAGACAACTGAGAGACGCAAAAAC
GAGTTCCCTCGATAATTCGGAGTCATTTTAGACTAGAGTGTACTTATATG
ACTGAACTTTGCTTTCTAGTTTTGTTTAATGACGCCGAGTCCAGTGAAGT
ACTCCTCCTAACCGCGCCATTTCAGTCTATAAAAAAGCTAAGTTGACCCC
GGGCTAGCGTCACTTAATTTTATTTGTATCATCAATTTACCGGACTTCCA
TTTTGTTTTATTTTGTAGAATTGTCAGCATCTGTACTGAACTTACGTTTT
ATTTTGTAGGATTGTCAGCATCTGTACTGAACTTACGTTTTATTTTGTAG
AATTGTCAGCATCTGTACTGAACTTACGGAAAGAAGAGAAGAACTTGATA
CTGGTCAAAACGAAAATGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028352XLOC_028352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044738-exon-sc0006117-1575043694:1365..1603TCONS_00044738-exon-sc0006117-1575043694:1365..1603Clytia hemisphaericaexon
TCONS_00044738-exon-sc0006117-1575043694:732..803TCONS_00044738-exon-sc0006117-1575043694:732..803Clytia hemisphaericaexon
TCONS_00044738-exon-sc0006117-1510915933:1365..1603TCONS_00044738-exon-sc0006117-1510915933:1365..1603Clytia hemisphaericaexon
TCONS_00044738-exon-sc0006117-1510915933:732..803TCONS_00044738-exon-sc0006117-1510915933:732..803Clytia hemisphaericaexon
TCONS_00044738-exon-sc0006117-1491911889:1365..1603TCONS_00044738-exon-sc0006117-1491911889:1365..1603Clytia hemisphaericaexon
TCONS_00044738-exon-sc0006117-1491911889:732..803TCONS_00044738-exon-sc0006117-1491911889:732..803Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006117supercontigsc0006117:732..1603 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.3566	20.0949	7.55112	5.78619	7.50202	7.57905	22.7974	33.0002	18.8423	22.8794	15.1876	13.9446	16.9692	17.3719	12.7736	19.0675	24.812	20.7952	2.5872	5.72442	15.5689	15.5312	19.2144	21.4397	44.2291	43.0994	5.69652	9.59356	16.5839	10.5732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top