TCONS_00044732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044732
Unique NameTCONS_00044732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044732 ID=TCONS_00044732|Name=TCONS_00044732|organism=Clytia hemisphaerica|type=transcript|length=475bp
agaacaaaacaaaagatGCAAAACATTACAAGCCGTCTCTTTTCAATCAC
TTCTTTGGTGGCAAGAAGATCAACCTTACCTTTCAAAGCCAACTTTCACT
CGAGCATTATATTGGCTTCCGATACTGGCTCAAAATATGCCATCAAACTC
AAACCAGACTTTGCTAACCCTAAATGGATCAACAGACACAAATTCATGTT
CAACTTTTTGGACATCAACGGTGACGGAAAAATCACTTTGGATGAGATCG
TGTCCAAAGCTTCGGATGATATTTGCGCANAGACACAAATTCATGTTCAA
CTTTTTGGACATCAACGGTGACGGAAAAATCACTTTGGATGAGATCGTGT
CCAAAGCTTCGGATGATATTTGTGCAAAACTAGACGCTACATCAGAACAA
ACCCAACGCCATCAAGATGCTATTGAAGCTTTCTTCAAGAAGATGGGCAT
GGATTATGGCAAGGAAGTGGAATTT
Run BLAST on NCBI

protein sequence of TCONS_00044732-protein

>TCONS_00044732-protein ID=TCONS_00044732-protein|Name=TCONS_00044732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
EQNKRCKTLQAVSFQSLLWWQEDQPYLSKPTFTRALYWLPILAQNMPSNS
NQTLLTLNGSTDTNSCSTFWTSTVTEKSLWMRSCPKLRMIFAXRHKFMFN
FLDINGDGKITLDEIVSKASDDICAKLDATSEQTQRHQDAIEAFFKKMGM
DYGKEVEF
Run BLAST on NCBI

transcript from alignment at sc0006109:9..483

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044732 ID=TCONS_00044732|Name=TCONS_00044732|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at sc0006109:9..483 (Clytia hemisphaerica)
AAATTCCACTTCCTTGCCATAATCCATGCCCATCTTCTTGAAGAAAGCTT
CAATAGCATCTTGATGGCGTTGGGTTTGTTCTGATGTAGCGTCTAGTTTT
GCACAAATATCATCCGAAGCTTTGGACACGATCTCATCCAAAGTGATTTT
TCCGTCACCGTTGATGTCCAAAAAGTTGAACATGAATTTGTGTCTNTGCG
CAAATATCATCCGAAGCTTTGGACACGATCTCATCCAAAGTGATTTTTCC
GTCACCGTTGATGTCCAAAAAGTTGAACATGAATTTGTGTCTGTTGATCC
ATTTAGGGTTAGCAAAGTCTGGTTTGAGTTTGATGGCATATTTTGAGCCA
GTATCGGAAGCCAATATAATGCTCGAGTGAAAGTTGGCTTTGAAAGGTAA
GGTTGATCTTCTTGCCACCAAAGAAGTGATTGAAAAGAGACGGCTTGTAA
TGTTTTGCatcttttgttttgttct

Coding sequence (CDS) from alignment at sc0006109:9..483

>TCONS_00044732 ID=TCONS_00044732|Name=TCONS_00044732|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0006109:9..483 (Clytia hemisphaerica)
AAATTCCACTTCCTTGCCATAATCCATGCCCATCTTCTTGAAGAAAGCTT
CAATAGCATCTTGATGGCGTTGGGTTTGTTCTGATGTAGCGTCTAGTTTT
GCACAAATATCATCCGAAGCTTTGGACACGATCTCATCCAAAGTGATTTT
TCCGTCACCGTTGATGTCCAAAAAGTTGAACATGAATTTGTGTCTNTGCG
CAAATATCATCCGAAGCTTTGGACACGATCTCATCCAAAGTGATTTTTCC
GTCACCGTTGATGTCCAAAAAGTTGAACATGAATTTGTGTCTGTTGATCC
ATTTAGGGTTAGCAAAGTCTGGTTTGAGTTTGATGGCATATTTTGAGCCA
GTATCGGAAGCCAATATAATGCTCGAGTGAAAGTTGGCTTTGAAAGGTAA
GGTTGATCTTCTTGCCACCAAAGAAGTGATTGAAAAGAGACGGCTTGTAA
TGTTTTGCatcttttgttttgttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028346XLOC_028346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044732-exon-sc0006109-1491911889:9..483TCONS_00044732-exon-sc0006109-1491911889:9..483Clytia hemisphaericaexon
TCONS_00044732-exon-sc0006109-1510915933:9..483TCONS_00044732-exon-sc0006109-1510915933:9..483Clytia hemisphaericaexon
TCONS_00044732-exon-sc0006109-1575043694:9..483TCONS_00044732-exon-sc0006109-1575043694:9..483Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044732-proteinTCONS_00044732-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006109supercontigsc0006109:9..483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2154.33	2212.31	2444.68	2189.04	0.772997	1.37484	0	0.50999	1.29024	2.34898	0.04779	0	0.171234	0	0.455974	0.125329	0.296875	0.917173	0.425342	0	1.31768	0	602.215	560.88	0	0	33.6053	34.5277	268.507	308.382
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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