TCONS_00044717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044717
Unique NameTCONS_00044717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044717 ID=TCONS_00044717|Name=TCONS_00044717|organism=Clytia hemisphaerica|type=transcript|length=351bp
TTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCATCCTTCCAAAATAC
GAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGAT
ACAGGGTGCTATCTTCAGCTGTATAAAATGAAAGCGAATTCTTGTGATTG
TGTAGTTCAACCATCTTTCCTTCTTTCTTGATTGATCGCTCATCATGAGG
TCGACTCGTATTTTCTTTAACAGCATTGCCTGTTGCTTCTGTGACATAAT
TTTATCCATCTTGATTTCTAGATTTACTCGTCCTGTCGCCAGAAGTGCTT
GAAAGCTGAGCGTGGACAATCGCAGCACCATCTTGCCAACCATCAGAATG
T
Run BLAST on NCBI

protein sequence of TCONS_00044717-protein

>TCONS_00044717-protein ID=TCONS_00044717-protein|Name=TCONS_00044717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
ILMVGKMVLRLSTLSFQALLATGRVNLEIKMDKIMSQKQQAMLLKKIRVD
LMMSDQSRKKERWLNYTITRIRFHFIQLKIAPCIELQRDIINTKPQLILS
YFGRMHSEIILTRLKR
Run BLAST on NCBI

transcript from alignment at sc0006064:1..351

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044717 ID=TCONS_00044717|Name=TCONS_00044717|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at sc0006064:1..351 (Clytia hemisphaerica)
ACATTCTGATGGTTGGCAAGATGGTGCTGCGATTGTCCACGCTCAGCTTT
CAAGCACTTCTGGCGACAGGACGAGTAAATCTAGAAATCAAGATGGATAA
AATTATGTCACAGAAGCAACAGGCAATGCTGTTAAAGAAAATACGAGTCG
ACCTCATGATGAGCGATCAATCAAGAAAGAAGGAAAGATGGTTGAACTAC
ACAATCACAAGAATTCGCTTTCATTTTATACAGCTGAAGATAGCACCCTG
TATCGAACTGCAAAGGGATATAATAAACACAAAACCCCAACTTATTCTTT
CGTATTTTGGAAGGATGCACAGTGAGATAATCTTGACAAGACTTAAAAGA
A

Coding sequence (CDS) from alignment at sc0006064:1..351

>TCONS_00044717 ID=TCONS_00044717|Name=TCONS_00044717|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0006064:1..351 (Clytia hemisphaerica)
ATTCTGATGGTTGGCAAGATGGTGCTGCGATTGTCCACGCTCAGCTTTCA
AGCACTTCTGGCGACAGGACGAGTAAATCTAGAAATCAAGATGGATAAAA
TTATGTCACAGAAGCAACAGGCAATGCTGTTAAAGAAAATACGAGTCGAC
CTCATGATGAGCGATCAATCAAGAAAGAAGGAAAGATGGTTGAACTACAC
AATCACAAGAATTCGCTTTCATTTTATACAGCTGAAGATAGCACCCTGTA
TCGAACTGCAAAGGGATATAATAAACACAAAACCCCAACTTATTCTTTCG
TATTTTGGAAGGATGCACAGTGAGATAATCTTGACAAGACTTAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028332XLOC_028332Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044717-proteinTCONS_00044717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044717-exon-sc0006064-1491911889:1..351TCONS_00044717-exon-sc0006064-1491911889:1..351Clytia hemisphaericaexon
TCONS_00044717-exon-sc0006064-1510915933:1..351TCONS_00044717-exon-sc0006064-1510915933:1..351Clytia hemisphaericaexon
TCONS_00044717-exon-sc0006064-1575043694:1..351TCONS_00044717-exon-sc0006064-1575043694:1..351Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006064supercontigsc0006064:1..351 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.999372	1.94909	1.41442	3.23463	4.04313	3.46118	4.59294	2.10501	0.421076	1.66723	2.22259	1.05086	8.70396	10.3346	4.69429	8.65124	1.81604	2.42008	6.96769	4.65587	7.47517	2.08893	1.8531	6.49906	4.72419	2.78138	3.7831	1.13388	0.831919	0.511457
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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