TCONS_00044713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044713
Unique NameTCONS_00044713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044713 ID=TCONS_00044713|Name=TCONS_00044713|organism=Clytia hemisphaerica|type=transcript|length=424bp
GAATTTTATTAAGCCTTTTGTCGTTCTCTTTAAGCTTGAAAATTCATTTT
CGAAAGCTAAAATCTTAATAAATTTGACCTGTCCATTCTTTAGACCATTG
CTTCAAGTTTGTAGTGAGTTGACCAATAGAATTATCCTCTTGCTCCCAGA
CGGTTTTAACATTTTGAGGTGAGTTTGAAACTTTTCTGTTGGCATTCTCT
TCTTTCTCAGAGCTTCCATCTGAAAAATTGAATAGTCAAATGTCATTATC
TTTTATATAAGTAAGTCTTAGACAGCAGTTTGAGGccacccgaaggctcc
tctttcaatagctatctacccgaaggtaggggagggcatggctggaaccc
cccccTGGCCgcagggggggggctaaaaggtcgagcagcgattggtacct
gattttagcctgtggctagggggg
Run BLAST on NCBI

transcript from alignment at sc0006061:1355..1778

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044713 ID=TCONS_00044713|Name=TCONS_00044713|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at sc0006061:1355..1778 (Clytia hemisphaerica)
cccccctagccacaggctaaaatcaggtaccaatcgctgctcgacctttt
agccccccccctgcGGCCAggggggggttccagccatgccctcccctacc
ttcgggtagatagctattgaaagaggagccttcgggtggCCTCAAACTGC
TGTCTAAGACTTACTTATATAAAAGATAATGACATTTGACTATTCAATTT
TTCAGATGGAAGCTCTGAGAAAGAAGAGAATGCCAACAGAAAAGTTTCAA
ACTCACCTCAAAATGTTAAAACCGTCTGGGAGCAAGAGGATAATTCTATT
GGTCAACTCACTACAAACTTGAAGCAATGGTCTAAAGAATGGACAGGTCA
AATTTATTAAGATTTTAGCTTTCGAAAATGAATTTTCAAGCTTAAAGAGA
ACGACAAAAGGCTTAATAAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028328XLOC_028328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044713-exon-sc0006061-1491911889:1355..1778TCONS_00044713-exon-sc0006061-1491911889:1355..1778Clytia hemisphaericaexon
TCONS_00044713-exon-sc0006061-1510915933:1355..1778TCONS_00044713-exon-sc0006061-1510915933:1355..1778Clytia hemisphaericaexon
TCONS_00044713-exon-sc0006061-1575043694:1355..1778TCONS_00044713-exon-sc0006061-1575043694:1355..1778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006061supercontigsc0006061:1355..1778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7258	11.103	13.4522	14.806	16.2446	15.1227	25.458	28.2029	16.8254	15.8461	15.8821	17.3638	16.5715	19.717	9.74477	12.2676	8.54734	15.2361	15.6117	21.2925	17.2307	16.8091	9.64922	13.2448	33.3074	29.726	10.8607	11.8323	8.60811	6.15787
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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