TCONS_00044709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044709
Unique NameTCONS_00044709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044709 ID=TCONS_00044709|Name=TCONS_00044709|organism=Clytia hemisphaerica|type=transcript|length=354bp
CAATCTTTTACTTCTCAAAACCATTTAGATTCAGGTTTTATATATAATAA
CAAAGatatttaaccaaaatttgtttcattaaagctatttttattCAGCA
AAATAAGCCTTTAGTAAATATTTAAACCCCCGGTTTTATTTCGATATTTA
CAATTTGATTTTACAGCGGGGGAGTTGGGAACCGGCTAGATTGTGtaatc
tgattggctgaatgAGCAAACGCGGGACTCGGCCCAGGACTTTTTACCTG
CATTTTAAACGCGTTTACGGCAATGTTTATTCtttacactttcgttttca
aaatctgttGAACATGGATTTTGGCTTGTGACGATTACCTCTCGTAACAT
CTGt
Run BLAST on NCBI

transcript from alignment at sc0006049:355..708

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044709 ID=TCONS_00044709|Name=TCONS_00044709|organism=Clytia hemisphaerica|type=transcript|length=354bp|location=Sequence derived from alignment at sc0006049:355..708 (Clytia hemisphaerica)
aCAGATGTTACGAGAGGTAATCGTCACAAGCCAAAATCCATGTTCaacag
attttgaaaacgaaagtgtaaaGAATAAACATTGCCGTAAACGCGTTTAA
AATGCAGGTAAAAAGTCCTGGGCCGAGTCCCGCGTTTGCTcattcagcca
atcagattaCACAATCTAGCCGGTTCCCAACTCCCCCGCTGTAAAATCAA
ATTGTAAATATCGAAATAAAACCGGGGGTTTAAATATTTACTAAAGGCTT
ATTTTGCTGaataaaaatagctttaatgaaacaaattttggttaaatatC
TTTGTTATTATATATAAAACCTGAATCTAAATGGTTTTGAGAAGTAAAAG
ATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028324XLOC_028324Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044709-exon-sc0006049-1491911889:355..708TCONS_00044709-exon-sc0006049-1491911889:355..708Clytia hemisphaericaexon
TCONS_00044709-exon-sc0006049-1510915933:355..708TCONS_00044709-exon-sc0006049-1510915933:355..708Clytia hemisphaericaexon
TCONS_00044709-exon-sc0006049-1575043694:355..708TCONS_00044709-exon-sc0006049-1575043694:355..708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006049supercontigsc0006049:355..708 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72986	1.12763	2.88862	3.62779	1.14613	1.27348	0	1.61816	1.82552	1.21748	0.794777	1.42895	0.97669	0.391364	2.0173	0.888649	1.54984	0.851663	1.59783	1.40114	1.55134	2.29798	0.930187	0.894916	0	0	0.900087	1.61123	0.71747	0.798265
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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