TCONS_00044697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044697
Unique NameTCONS_00044697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044697 ID=TCONS_00044697|Name=TCONS_00044697|organism=Clytia hemisphaerica|type=transcript|length=547bp
CACTTTTTCTCCCAATCAGCAAGTTTATCTAGGCCAGACTGTAGTTGCTC
GCAATCTTTGATAGATTGTATTTTCCGGTAAAGATAGGAGTCATCAGCAA
ATAAAGCCAGGTTTGAGTCTGTCTCAAGTGGCATGTCATTTATGTAGGCA
AGAAAGAGGAGGGGACCAAGAACGGTACCTTGGGGGACACCTGACATGAC
TGCTGTTTGTTTAGACGATTTTCGTCAAACTACAACACGTTGGGTTCGAT
CTTGAAGAAAGTCTGTTATCAAAGACAGAATCAAtctgttttttgttgtt
gactGCTTTTGCGATATCGTGGATAGTTTGAATGAGTTGGGTTTTGCAAG
ATCTGTACTTTCTAAAACCATGCTGAGTATCAGAAAGTACATTTTCTTGA
TCAAAATGTGACATTATGTGTGTGTGGATAATATGTTCCATAATTTTACA
GGTTGTGGAAGTTAAACTAACAGGTCTAAAGTTCTCTGGTTTTGAGCGAT
TTTTATTCCCACCTTTGTATAATGGGGTAATAATGGCTTGTTTCCAA
Run BLAST on NCBI

protein sequence of TCONS_00044697-protein

>TCONS_00044697-protein ID=TCONS_00044697-protein|Name=TCONS_00044697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
WKQAIITPLYKGGNKNRSKPENFRPVSLTSTTCKIMEHIIHTHIMSHFDQ
ENVLSDTQHGFRKYRSCKTQLIQTIHDIAKAVNNKKQIDSVFDNRLSSRS
NPTCCSLTKIV
Run BLAST on NCBI

transcript from alignment at sc0006029:1028..1574

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044697 ID=TCONS_00044697|Name=TCONS_00044697|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0006029:1028..1574 (Clytia hemisphaerica)
TTGGAAACAAGCCATTATTACCCCATTATACAAAGGTGGGAATAAAAATC
GCTCAAAACCAGAGAACTTTAGACCTGTTAGTTTAACTTCCACAACCTGT
AAAATTATGGAACATATTATCCACACACACATAATGTCACATTTTGATCA
AGAAAATGTACTTTCTGATACTCAGCATGGTTTTAGAAAGTACAGATCTT
GCAAAACCCAACTCATTCAAACTATCCACGATATCGCAAAAGCagtcaac
aacaaaaaacagaTTGATTCTGTCTTTGATAACAGACTTTCTTCAAGATC
GAACCCAACGTGTTGTAGTTTGACGAAAATCGTCTAAACAAACAGCAGTC
ATGTCAGGTGTCCCCCAAGGTACCGTTCTTGGTCCCCTCCTCTTTCTTGC
CTACATAAATGACATGCCACTTGAGACAGACTCAAACCTGGCTTTATTTG
CTGATGACTCCTATCTTTACCGGAAAATACAATCTATCAAAGATTGCGAG
CAACTACAGTCTGGCCTAGATAAACTTGCTGATTGGGAGAAAAAGTG

Coding sequence (CDS) from alignment at sc0006029:1028..1574

>TCONS_00044697 ID=TCONS_00044697|Name=TCONS_00044697|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0006029:1028..1574 (Clytia hemisphaerica)
TGGAAACAAGCCATTATTACCCCATTATACAAAGGTGGGAATAAAAATCG
CTCAAAACCAGAGAACTTTAGACCTGTTAGTTTAACTTCCACAACCTGTA
AAATTATGGAACATATTATCCACACACACATAATGTCACATTTTGATCAA
GAAAATGTACTTTCTGATACTCAGCATGGTTTTAGAAAGTACAGATCTTG
CAAAACCCAACTCATTCAAACTATCCACGATATCGCAAAAGCagtcaaca
acaaaaaacagaTTGATTCTGTCTTTGATAACAGACTTTCTTCAAGATCG
AACCCAACGTGTTGTAGTTTGACGAAAATCGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028312XLOC_028312Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044697-proteinTCONS_00044697-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044697-exon-sc0006029-1491911889:1028..1574TCONS_00044697-exon-sc0006029-1491911889:1028..1574Clytia hemisphaericaexon
TCONS_00044697-exon-sc0006029-1510915933:1028..1574TCONS_00044697-exon-sc0006029-1510915933:1028..1574Clytia hemisphaericaexon
TCONS_00044697-exon-sc0006029-1575043694:1028..1574TCONS_00044697-exon-sc0006029-1575043694:1028..1574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006029supercontigsc0006029:1028..1574 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.629782	1.00081	1.54499	2.02455	0.141549	0.447417	0	0.126336	0.176902	0	0.531712	0.139811	0	0	0.178806	0.0639619	0.315184	0.161526	0	0.467037	0	0	0	0.21883	0	0.100578	0.287852	0	0.116502	0.13842
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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