TCONS_00044694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044694
Unique NameTCONS_00044694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044694 ID=TCONS_00044694|Name=TCONS_00044694|organism=Clytia hemisphaerica|type=transcript|length=607bp
ATTTTGAAGTACCAGCAACCACGATTTTGTACATATCGTAGCTGAATTCT
ACCCTTAGTCTACTGCCTGAACTCGGTTAATTATGACCATACAATCTTGT
AAAATCATTCTGTATTTCGACTCATATTTTCAGGACAAGAGAGCAGTATT
TTTACTCAAATGGGACAACGGCATCGAGTCGAGTTTGGACGAGAAAGATT
TCTACCCAGCTTTGTGTCTTCTGAAGGAAAATTTGTCAGAATTCTACTAC
CCGAATGCGAAAGTCATTTCAAGGTTTATGAACCTCTTGAAGGTAGGTGA
TAGCTGTTGTTTTCGCCCGTCTCAGGGAAATAAAGAGATGCGCAGATTTG
ACAGCCGATAATGGCAGTAGTTAAAGAGACAAATTGCCGCGGTAGAGTCT
CGAAGACGGCCACTTTTACCGCCTAAACTAACTCGCTTCGAAGGTAAAAC
CTGTGTTCGCCAACTTTTCGAAgattatttcttagatagtaatgtgtaat
ttttctaatttaacgcgtaCTCTAATTTAACTAATTTGGCGAAAAGTCGT
AATTAATTTTACTCTAATTATTACGCGTGGTCAAGCCTTGGAAAACTTAT
acaagaa
Run BLAST on NCBI

transcript from alignment at sc0006023:1957..2563

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044694 ID=TCONS_00044694|Name=TCONS_00044694|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at sc0006023:1957..2563 (Clytia hemisphaerica)
ttcttgtATAAGTTTTCCAAGGCTTGACCACGCGTAATAATTAGAGTAAA
ATTAATTACGACTTTTCGCCAAATTAGTTAAATTAGAGtacgcgttaaat
tagaaaaattacacattactatctaagaaataatcTTCGAAAAGTTGGCG
AACACAGGTTTTACCTTCGAAGCGAGTTAGTTTAGGCGGTAAAAGTGGCC
GTCTTCGAGACTCTACCGCGGCAATTTGTCTCTTTAACTACTGCCATTAT
CGGCTGTCAAATCTGCGCATCTCTTTATTTCCCTGAGACGGGCGAAAACA
ACAGCTATCACCTACCTTCAAGAGGTTCATAAACCTTGAAATGACTTTCG
CATTCGGGTAGTAGAATTCTGACAAATTTTCCTTCAGAAGACACAAAGCT
GGGTAGAAATCTTTCTCGTCCAAACTCGACTCGATGCCGTTGTCCCATTT
GAGTAAAAATACTGCTCTCTTGTCCTGAAAATATGAGTCGAAATACAGAA
TGATTTTACAAGATTGTATGGTCATAATTAACCGAGTTCAGGCAGTAGAC
TAAGGGTAGAATTCAGCTACGATATGTACAAAATCGTGGTTGCTGGTACT
TCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028309XLOC_028309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044694-exon-sc0006023-1491911889:1957..2563TCONS_00044694-exon-sc0006023-1491911889:1957..2563Clytia hemisphaericaexon
TCONS_00044694-exon-sc0006023-1510915933:1957..2563TCONS_00044694-exon-sc0006023-1510915933:1957..2563Clytia hemisphaericaexon
TCONS_00044694-exon-sc0006023-1575043694:1957..2563TCONS_00044694-exon-sc0006023-1575043694:1957..2563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006023supercontigsc0006023:1957..2563 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0875331	0.205272	0	8.07122	11.399	6.99082	10.1926	5.72071	6.53028	6.683	5.53024	5.9997	5.31317	0.0506167	0.0543194	0.334586	0	0.379031	0	0.0865987	0.126115	0.41489	0.187133	8.90063	18.2788	0	0	0	0.204645
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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