TCONS_00044688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044688
Unique NameTCONS_00044688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044688 ID=TCONS_00044688|Name=TCONS_00044688|organism=Clytia hemisphaerica|type=transcript|length=592bp
CCAAAATCAAGACATGGACTTTTTATCTCCTGTGTTGACTTCAATTTTTA
TATaacgtgaagtcgggtaacttgcatcagtgcagTTGAGGCTAACatga
tgcatagccctcaaatgaatgacctgtctggtccttaaaatacaaagtta
aatcaaaacaaaaatggtagagtagagctgcgagcgaagcagcatagttc
atttgtttttaaattttgctgctttgattggtcagtcatttgagggctat
gtatgttagcctccactgcaAGTTACCCAAATTCACGGTATAAAATCAAC
TAgccagaaatttaaaaaaagaatcattACCTCACAGAAAAATTCATTTC
CCCTTAATCCACAGAACCAAGAAATCCACGATACTTCCTCTGAGCTACTC
ATTTTGTTTTAGAAGCTTTTGTATTTGTGAATTTActattttttttgaga
tttttgtgtCTCCACCTCGAGTATTTTTTTTGATTCTGTTGCTGTGAGCT
TGGGGAGATCTGGGTCTGGCAAAATAAAGTTTCGCCACCGTGAAATTAGC
GAGGTAGGTTCAAAGCCCGTTCTACACGATTAAAAATCGCAT
Run BLAST on NCBI

transcript from alignment at sc0006015:571..1162

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044688 ID=TCONS_00044688|Name=TCONS_00044688|organism=Clytia hemisphaerica|type=transcript|length=592bp|location=Sequence derived from alignment at sc0006015:571..1162 (Clytia hemisphaerica)
ATGCGATTTTTAATCGTGTAGAACGGGCTTTGAACCTACCTCGCTAATTT
CACGGTGGCGAAACTTTATTTTGCCAGACCCAGATCTCCCCAAGCTCACA
GCAACAGAATCAAAAAAAATACTCGAGGTGGAGacacaaaaatctcaaaa
aaaatagTAAATTCACAAATACAAAAGCTTCTAAAACAAAATGAGTAGCT
CAGAGGAAGTATCGTGGATTTCTTGGTTCTGTGGATTAAGGGGAAATGAA
TTTTTCTGTGAGGTaatgattctttttttaaatttctggcTAGTTGATTT
TATACCGTGAATTTGGGTAACTtgcagtggaggctaacatacatagccct
caaatgactgaccaatcaaagcagcaaaatttaaaaacaaatgaactatg
ctgcttcgctcgcagctctactctaccatttttgttttgatttaactttg
tattttaaggaccagacaggtcattcatttgagggctatgcatcatGTTA
GCCTCAActgcactgatgcaagttacccgacttcacgttATATAAAAATT
GAAGTCAACACAGGAGATAAAAAGTCCATGTCTTGATTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028303XLOC_028303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044688-exon-sc0006015-1491911889:571..1162TCONS_00044688-exon-sc0006015-1491911889:571..1162Clytia hemisphaericaexon
TCONS_00044688-exon-sc0006015-1510915933:571..1162TCONS_00044688-exon-sc0006015-1510915933:571..1162Clytia hemisphaericaexon
TCONS_00044688-exon-sc0006015-1575043694:571..1162TCONS_00044688-exon-sc0006015-1575043694:571..1162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006015supercontigsc0006015:571..1162 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
81.5306	74.645	77.993	92.7053	26.3914	21.3182	19.3667	24.1516	42.7945	42.5089	35.7659	36.0026	31.7738	34.2299	23.5159	25.0164	25.1782	27.7378	21.7825	23.0364	35.5467	26.5286	46.6388	41.4809	10.6527	15.6228	34.4014	34.0046	27.8257	33.7208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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