TCONS_00044654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044654
Unique NameTCONS_00044654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044654 ID=TCONS_00044654|Name=TCONS_00044654|organism=Clytia hemisphaerica|type=transcript|length=416bp
AGTCTTTGTTCTATCTTCTTATTTACATCATTTTGTGTTTTCAAAGTCGT
AATATCAGTTTCATGTGCAAGTCTAGCACTTTCATCCCTTATCATTTCAC
cagtttttctttccttttcagACTTCTCATAATTCAAATGATTGGATACA
TGCCATTCCTTTTGAGTATATTTTGTTGGTGCTTCTATAAGTTTTGCCAT
AATTTTACACGTTGCTTCCACCaggaatttttaaaatcaacccAGTATCA
ACTCAACCCTGGTTCACACACGTCTGAACCCTCTCGCGTTCTTTCCTGCT
ctgaatgttttgatcgcagTAAGGAGCTACcattttaaaagaatgttttg
atCCCATGGTAACAACTGTAAATTTTGTGAGGGGCGGACCGCGGGCGCAT
ACCTATCTGTGGGGCG
Run BLAST on NCBI

transcript from alignment at sc0005948:2615..3030

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044654 ID=TCONS_00044654|Name=TCONS_00044654|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at sc0005948:2615..3030 (Clytia hemisphaerica)
CGCCCCACAGATAGGTATGCGCCCGCGGTCCGCCCCTCACAAAATTTACA
GTTGTTACCATGGGatcaaaacattcttttaaaatgGTAGCTCCTTActg
cgatcaaaacattcagAGCAGGAAAGAACGCGAGAGGGTTCAGACGTGTG
TGAACCAGGGTTGAGTTGATACTgggttgattttaaaaattcctGGTGGA
AGCAACGTGTAAAATTATGGCAAAACTTATAGAAGCACCAACAAAATATA
CTCAAAAGGAATGGCATGTATCCAATCATTTGAATTATGAGAAGTctgaa
aaggaaagaaaaactgGTGAAATGATAAGGGATGAAAGTGCTAGACTTGC
ACATGAAACTGATATTACGACTTTGAAAACACAAAATGATGTAAATAAGA
AGATAGAACAAAGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028270XLOC_028270Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044654-exon-sc0005948-1491911889:2615..3030TCONS_00044654-exon-sc0005948-1491911889:2615..3030Clytia hemisphaericaexon
TCONS_00044654-exon-sc0005948-1510915933:2615..3030TCONS_00044654-exon-sc0005948-1510915933:2615..3030Clytia hemisphaericaexon
TCONS_00044654-exon-sc0005948-1575043694:2615..3030TCONS_00044654-exon-sc0005948-1575043694:2615..3030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005948supercontigsc0005948:2615..3030 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
71.1269	69.8613	108.284	123.975	563.955	448.019	160.855	164.824	47.9498	60.4669	41.3266	40.978	3.64756	2.36751	3.11427	5.01313	2.31591	6.98934	4.37259	5.33821	6.62839	3.63723	16.507	19.1164	298.103	177.53	34.0764	29.3446	10.2724	7.36493
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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