TCONS_00044627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044627
Unique NameTCONS_00044627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044627 ID=TCONS_00044627|Name=TCONS_00044627|organism=Clytia hemisphaerica|type=transcript|length=614bp
ACGACGTAATTCAAATTCCTTACCCCTTGCCCTTTCAGTGAACTTGATGT
CCAGTGCGGTGGCGATGGACCACAATGTCTCCACATCTGCTTCAGCCACA
CCTCTCAAGACTTCATGCACAACAGATTCCATGATGATTGCCCCGGATTG
CACTGATACCACCAGATAATGCCANTgagggaaaattttttccaaaatag
agcttaaatttgagcaaaagttTAGTAAAAGGGCGCCTTAAAGGGAAAAG
GGCGCTAAAGTTACATAATAAAGAGCAAATACGAAAGAAAACTTCcttct
tttggcgccccttcaaaaagcCTCCACTGGGAGGGGGAAGTTGCCCCCTG
CCACTGTAGTAACCCGAAAGCTACTGAAAACGTTTGGTGGATGGTACTGG
ACAGAAGAAATTGAGAACCCAAGTCATTTACAAGATGACATAAACTAAAT
ATATTTTCTGCTCTAGCAATGGTACAGCATGTATGGTATTCAACCAGAAC
TCTGTGTAATCCACATGCTCTTATTGAGCCTGGTCAGAAAGGTCAAACTC
GTTACCAGGCCCCAAAGAGCATGGGCAGCAAAGACAAAACACAGAACACT
CAACAAAGGGGCNN
Run BLAST on NCBI

transcript from alignment at sc0005904:1233..1846

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044627 ID=TCONS_00044627|Name=TCONS_00044627|organism=Clytia hemisphaerica|type=transcript|length=614bp|location=Sequence derived from alignment at sc0005904:1233..1846 (Clytia hemisphaerica)
NNGCCCCTTTGTTGAGTGTTCTGTGTTTTGTCTTTGCTGCCCATGCTCTT
TGGGGCCTGGTAACGAGTTTGACCTTTCTGACCAGGCTCAATAAGAGCAT
GTGGATTACACAGAGTTCTGGTTGAATACCATACATGCTGTACCATTGCT
AGAGCAGAAAATATATTTAGTTTATGTCATCTTGTAAATGACTTGGGTTC
TCAATTTCTTCTGTCCAGTACCATCCACCAAACGTTTTCAGTAGCTTTCG
GGTTACTACAGTGGCAGGGGGCAACTTCCCCCTCCCAGTGGAGgcttttt
gaaggggcgccaaaagaagGAAGTTTTCTTTCGTATTTGCTCTTTATTAT
GTAACTTTAGCGCCCTTTTCCCTTTAAGGCGCCCTTTTACTAaacttttg
ctcaaatttaagctctattttggaaaaaattttccctcANTGGCATTATC
TGGTGGTATCAGTGCAATCCGGGGCAATCATCATGGAATCTGTTGTGCAT
GAAGTCTTGAGAGGTGTGGCTGAAGCAGATGTGGAGACATTGTGGTCCAT
CGCCACCGCACTGGACATCAAGTTCACTGAAAGGGCAAGGGGTAAGGAAT
TTGAATTACGTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028244XLOC_028244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044627-exon-sc0005904-1491911889:1233..1846TCONS_00044627-exon-sc0005904-1491911889:1233..1846Clytia hemisphaericaexon
TCONS_00044627-exon-sc0005904-1510915933:1233..1846TCONS_00044627-exon-sc0005904-1510915933:1233..1846Clytia hemisphaericaexon
TCONS_00044627-exon-sc0005904-1575043694:1233..1846TCONS_00044627-exon-sc0005904-1575043694:1233..1846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005904supercontigsc0005904:1233..1846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.23948	4.20711	3.96417	2.45755	58.4265	39.5521	24.2133	31.3568	17.0373	24.8903	41.5252	22.027	20.1031	22.8104	17.1724	21.388	19.0933	15.905	40.6081	42.7556	35.1135	38.4915	23.3182	22.6025	9.71677	15.368	59.7675	46.2582	36.2675	34.6669
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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