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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044600 ID=TCONS_00044600|Name=TCONS_00044600|organism=Clytia hemisphaerica|type=transcript|length=626bp
ATAGGTCTTTTTTCAGCTACTAATTGAAATACTCCACGTCCCGGATGAGC
CCCAAGCAAAGCCAGaagTGATAAGTAAATATACAACTTCAATACCGTTC
AATCCACATGGCATTTGGCGAAAGAATAGAACTGACAATCAGTATGGCCC
TAACTTGGAATACAGCCTTAAAGTGAAATGTGATAAAGATTACGGTGGAA
GTGCCTGTGCTTTTTTCTGTGTACCACGTGATAAATGGGATGGACATTTT
GATTGTGATGAAAACAAGAGGCTAGTTTGTCATGCTGGATATACTGGACA
ATTTTGCAATATTCCAATGTGTGATCCAACTTGTGAAAATGGCCATTGTT
TGTCTCCGTACAAGTGTAGTTGTAGTCGAGGTTGGAAAGGATATACATGT
GGTGAGTGTGTTGTGGGGCCTGGTTGCCTTCATGGTACATGTGACGAGCC
TTATGAATGCAATTGCTCTGAGGGATGGTCAGGTGGGACTTGTGATACAT
GCGTCAAAGCACCTGGCTGTGTTCATGGGGCATGTAACCTACCAGATGAG
TGCAATTGCGACATTGGTTGGACAGGAGAAAACTGTGATCAGAGTATGTC
ATTAGTTATCAATATTCACTTTGAGG Run BLAST on NCBI protein sequence of TCONS_00044600-protein >TCONS_00044600-protein ID=TCONS_00044600-protein|Name=TCONS_00044600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MLDILDNFAIFQCVIQLVKMAIVCLRTSVVVVEVGKDIHVVSVLWGLVAF
MVHVTSLMNAIALRDGQVGLVIHASKHLAVFMGHVTYQMSAIATLVGQEK
TVIRVCH Run BLAST on NCBI transcript from alignment at sc0005862:291..2750+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044600 ID=TCONS_00044600|Name=TCONS_00044600|organism=Clytia hemisphaerica|type=transcript|length=2460bp|location=Sequence derived from alignment at sc0005862:291..2750+ (Clytia hemisphaerica)
ATAGGTCTTTTTTCAGCTACTAATTGAAATACTCCACGTCCCGGATGAGC
CCCAAGCAAAGCCAGGTAAATAGGCTCGTTGATTTGACTTATTAAAAATC
TATTGATGGGAATTTCTCTTTTGAAATCCATGCAGCAATATTGAATGAGA
AGCGGTTCCTTTGATTAAAAGTAAATGAatcttttgaatgaatattGACG
TCACCAAAAACTAATGTAAAGAGTTATGAGTACCTGTTATATTTGTGACT
AAAACAAGACTATTGATTCTTTTGTGTTCCCAATTCATTATTATGCAATC
AATGTCCACTTTGgttttattaaatatttattttaccgAACACGCGCGTG
CtcaaaacgaaagcgaaaacgaaagcaTTTATTTTGATTTCCGAGAAATT
CGTTTGTTTGAGGGGAAATCTGAAATGTACAAAACTTAGAACTCTCTAGT
GAAGCTAgagtaattttatttttcaatttttcagaagTGATAAGTAAATA
TACAACTTCAATACCGTTCAATCCACATGGCATTTGGCGAAAGAATAGAA
CTGACAATCAGTATGGCCCTAACTTGGAATACAGCCTTAAAGTGAAATGT
GATAAAGATTACGGTGGAAGTGCCTGTGCTTTTTTCTGTGTACCACGTGA
TAAATGGGATGGACATTTTGATTGTGATGAAAACAAGAGGCTAGTTTGTC
ATGCTGGATATACTGGACAATTTTGCAATATTCGTAAGACTTATTCTTTA
ACAGTGAagctagcctgggaatccaagctcataatcttagaaaaaacaac
aaatgcctcacctcacaaagttctaagattgtagagcttggtgcaggtag
attagtctgacacagaatgttatgaACAGTTTGTGTGTGAACCGTTGCTG
ACACACTTTcagaactttggaaacccaggcaaacacacataatcaactta
ccataaaaaNAAAAACTCCTCCACAacctctaaagactttcaaaactata
ctaaaaaccacatcaaaacatcagccacatgtatttagacttccagccaa
cagccattttgtttcaaaatgaatctatgttttcattttcatttgtttta
cttttttctgcagagacagctttttccataaactatgcgtgcgcatcgaa
attatcaaaatttgcgcgaaagtactgctaagtaatacgccgaaagctgg
ccaatcaggctgaacctgcattgcagggaaaaatctccctgcaggcgagt
tacctgtgCCAAGcattaaacaagcagcaaaaatatcataaactagactg
tgaacaaagtttaacgcttggattcccaggctacagtgaagcttgaattt
tgaaactgtaaactattttctcattttgatatTTCTGCTGTTTACTGTGT
CTGGTTTGGAAACCCAGTGTCTGCAAATTCTCGGCTAGGTCTGATGATTG
AAAATGTGACAAAATATCCATTATACATCTGCTTTCTGCTTTTTGATGGC
AAATCAATTTAGAAATACCAGAAACATAAATTCAAAATAGCATATAGCCA
CTGGATATCCATGCTTACAAAGGCTACAGTATTACTTAACTAGATATGAC
AATCAAAGAATGGGACCCGTGTGGAATtcctttttgaattatttccaaaa
tttgcaaaaaagtgaccctgaatggctAAAAcctttatcattgttttgta
ATGTTAATTGGGACTGGTGGAgtttaaaaaaggtaccctttccaGCAGCA
CATCCTCATACTTCTTTTTGCCTTAGTGTTCCCTAGGCttaaattttctt
gatttattcCTCCTTATTTATTCAGAAAATAAATGTACTTGAATAAGCAG
GAATAAGAACTGGTTATACTTTTAAGGAAGTAATTCTTAATCTTACTAGT
TTCAATCTGGGTCTCGAACAAAACTTCATTTGCAAAATTCTTTTGATAAT
ATGCTTTGTTATAATGAAGTTTCTTTCTTTTAGTATTAGcatattttaaa
ttattatttcatttataatTTTATGCAGCAATGTGTGATCCAACTTGTGA
AAATGGCCATTGTTTGTCTCCGTACAAGTGTAGGTTAGTTGATTCAtgtt
ttacaaaaattgaaaatttaaggATCAAGCTCGTACCAATTTCTCCTCAT
AATTAGAGTGACAGGTTCTGAATATTTATTGATGtcaaatttatttcttt
tagTTGTAGTCGAGGTTGGAAAGGATATACATGTGGTGAGTGTGTTGTGG
GGCCTGGTTGCCTTCATGGTACATGTGACGAGCCTTATGAATGCAATTGC
TCTGAGGGATGGTCAGGTGGGACTTGTGATACATGCGTCAAAGCACCTGG
CTGTGTTCATGGGGCATGTAACCTACCAGATGAGTGCAATTGCGACATTG
GTTGGACAGGAGAAAACTGTGATCAGAGTATGTCATTAGTTATCAATATT
CACTTTGAGG Coding sequence (CDS) from alignment at sc0005862:291..2750+ >TCONS_00044600 ID=TCONS_00044600|Name=TCONS_00044600|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0005862:291..2750+ (Clytia hemisphaerica)
ATGCTGGATATACTGGACAATTTTGCAATATTCCAATGTGTGATCCAACT
TGTGAAAATGGCCATTGTTTGTCTCCGTACAAGTGTAGTTGTAGTCGAGG
TTGGAAAGGATATACATGTGGTGAGTGTGTTGTGGGGCCTGGTTGCCTTC
ATGGTACATGTGACGAGCCTTATGAATGCAATTGCTCTGAGGGATGGTCA
GGTGGGACTTGTGATACATGCGTCAAAGCACCTGGCTGTGTTCATGGGGC
ATGTAACCTACCAGATGAGTGCAATTGCGACATTGGTTGGACAGGAGAAA
ACTGTGATCAGAGTATGTCATTAGATGCTGGATATACTGGACAATTTTGC
AATATTCCAATGTGTGATCCAACTTGTGAAAATGGCCATTGTTTGTCTCC
GTACAAGTGTAGTTGTAGTCGAGGTTGGAAAGGATATACATGTGGTGAGT
GTGTTGTGGGGCCTGGTTGCCTTCATGGTACATGTGACGAGCCTTATGAA
TGCAATTGCTCTGAGGGATGGTCAGGTGGGACTTGTGATACATGCGTCAA
AGCACCTGGCTGTGTTCATGGGGCATGTAACCTACCAGATGAGTGCAATT
GCGACATTGGTTGGACAGGAGAAAACTGTGATCAGAGTATGTCATTAGAT
GCTGGATATACTGGACAATTTTGCAATATTCCAATGTGTGATCCAACTTG
TGAAAATGGCCATTGTTTGTCTCCGTACAAGTGTAGTTGTAGTCGAGGTT
GGAAAGGATATACATGTGGTGAGTGTGTTGTGGGGCCTGGTTGCCTTCAT
GGTACATGTGACGAGCCTTATGAATGCAATTGCTCTGAGGGATGGTCAGG
TGGGACTTGTGATACATGCGTCAAAGCACCTGGCTGTGTTCATGGGGCAT
GTAACCTACCAGATGAGTGCAATTGCGACATTGGTTGGACAGGAGAAAAC
TGTGATCAGAGTATGTCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044600-exon-sc0005862-1491911889:291..355 | TCONS_00044600-exon-sc0005862-1491911889:291..355 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1510915933:291..355 | TCONS_00044600-exon-sc0005862-1510915933:291..355 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1575043694:291..355 | TCONS_00044600-exon-sc0005862-1575043694:291..355 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1491911889:775..1023 | TCONS_00044600-exon-sc0005862-1491911889:775..1023 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1510915933:775..1023 | TCONS_00044600-exon-sc0005862-1510915933:775..1023 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1575043694:775..1023 | TCONS_00044600-exon-sc0005862-1575043694:775..1023 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1491911889:2319..2373 | TCONS_00044600-exon-sc0005862-1491911889:2319..2373 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1510915933:2319..2373 | TCONS_00044600-exon-sc0005862-1510915933:2319..2373 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1575043694:2319..2373 | TCONS_00044600-exon-sc0005862-1575043694:2319..2373 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1491911889:2494..2750 | TCONS_00044600-exon-sc0005862-1491911889:2494..2750 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1510915933:2494..2750 | TCONS_00044600-exon-sc0005862-1510915933:2494..2750 | Clytia hemisphaerica | exon |
| TCONS_00044600-exon-sc0005862-1575043694:2494..2750 | TCONS_00044600-exon-sc0005862-1575043694:2494..2750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005862 | supercontig | sc0005862:291..2750 + |
Blast
BLAST of TCONS_00044600 vs. Swiss-Prot (Human)
Match: DLL1 (Delta-like protein 1 OS=Homo sapiens GN=DLL1 PE=1 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 6.726e-33 Identity = 80/211 (37.91%), Postives = 112/211 (53.08%), Query Frame = 2
Query: 11 FQLLIEILHV--PDEPQAK-PE-VISKYTTSIPFNPHGIWRKNRTDNQYGPNLEYSLKVKCDKDYGGSACAFFCVPRDKWDGHFDCDENKRLVCHAGYTGQFCNIPMCDPTC--ENGHCLSPYKCSCSRGWKGYTCGECVVGPGCLHGTCDEPYECNCSEGWSGGTCDT----CVKAPGCVHGA-CNLPDE----CNCDIGWTGENCDQSM 598
F L+IE LH PD+ + PE +IS+ T W ++ + +L+YS + CD+ Y G C+ FC PRD GHF C E VC+ G+ G +C P+C P C ++G C P +C C GW+G C EC+ PGCLHGTC +P++CNC EGW G C+ C C +GA C + C+C G+TG C+ +
Sbjct: 120 FSLIIEALHTDSPDDLATENPERLISRLATQRHLTVGEEWSQDLHSSGR-TDLKYSYRFVCDEHYYGEGCSVFCRPRDDAFGHFTCGERGEKVCNPGWKGPYCTEPICLPGCDEQHGFCDKPGECKCRVGWQGRYCDECIRYPGCLHGTCQQPWQCNCQEGWGGLFCNQDLNYCTHHKPCKNGATCTNTGQGSYTCSCRPGYTGATCELGI 329
The following BLAST results are available for this feature:
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