TCONS_00044597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044597
Unique NameTCONS_00044597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044597 ID=TCONS_00044597|Name=TCONS_00044597|organism=Clytia hemisphaerica|type=transcript|length=572bp
AAAGTTAATAGCTCGTATCATCTACTAAACTTtcttaccacactgaaaaa
ccAATATAAtatgaataaaaacaaacttcttatGTTCTATAAAAGTCTCT
TAAGATCAAGACTTGAATACTCCCACATTTGCCTTCTTTCTCTCTCAAAC
TTTCAACTTAACAGATTAGAAttaattcaaaacaaagctTTACGTATAAT
TTTAAACAAACCAAGATGGACAAGAATCACAGACATGTATGCCGAAGCCA
AGATCTGCtcaataatagacagacttaaAAATCTTTCTAAGAGATGGTTT
AACAAAGCAGTAGCTACACCTCATCACCCAATCAATCACACAGAATACTT
AACGAGAAATAATCCTGATAAACCAACGTTATATGAGCTACTATTGTCTT
TTTGAACTTCTTTTAATACACTTATAGTATTNNNNNTTTAACAAAGCAGT
AGCTACACCTCATCACCCAATCAATCACACAGAATACTTAACGAGAAATA
ATCCTGATAAACCAACGTTATATGAGCTACTATTGTCTTTTTGAACTTCT
TTTAATACACTTATAGTATTTt
Run BLAST on NCBI

transcript from alignment at sc0005861:675..1246

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044597 ID=TCONS_00044597|Name=TCONS_00044597|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0005861:675..1246 (Clytia hemisphaerica)
aAAATACTATAAGTGTATTAAAAGAAGTTCAAAAAGACAATAGTAGCTCA
TATAACGTTGGTTTATCAGGATTATTTCTCGTTAAGTATTCTGTGTGATT
GATTGGGTGATGAGGTGTAGCTACTGCTTTGTTAAANNNNNAATACTATA
AGTGTATTAAAAGAAGTTCAAAAAGACAATAGTAGCTCATATAACGTTGG
TTTATCAGGATTATTTCTCGTTAAGTATTCTGTGTGATTGATTGGGTGAT
GAGGTGTAGCTACTGCTTTGTTAAACCATCTCTTAGAAAGATTTttaagt
ctgtctattattgaGCAGATCTTGGCTTCGGCATACATGTCTGTGATTCT
TGTCCATCTTGGTTTGTTTAAAATTATACGTAAagctttgttttgaatta
aTTCTAATCTGTTAAGTTGAAAGTTTGAGAGAGAAAGAAGGCAAATGTGG
GAGTATTCAAGTCTTGATCTTAAGAGACTTTTATAGAACataagaagttt
gtttttattcataTTATATTggtttttcagtgtggtaagaAAGTTTAGTA
GATGATACGAGCTATTAACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028216XLOC_028216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044597-exon-sc0005861-1491911889:675..1246TCONS_00044597-exon-sc0005861-1491911889:675..1246Clytia hemisphaericaexon
TCONS_00044597-exon-sc0005861-1510915933:675..1246TCONS_00044597-exon-sc0005861-1510915933:675..1246Clytia hemisphaericaexon
TCONS_00044597-exon-sc0005861-1575043694:675..1246TCONS_00044597-exon-sc0005861-1575043694:675..1246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005861supercontigsc0005861:675..1246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.190614	0.11066	0	0.790805	0.312452	1.00523	0.117635	0	0.612091	0	0.0650909	0.455003	0	0.277485	0.476455	0.88043	0.376005	1.45452	0.434872	1.03945	2.7655	0.336182	0.509398	0.209867	0.468253	1.20612	2.28837	0.216956	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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