TCONS_00044589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044589
Unique NameTCONS_00044589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044589 ID=TCONS_00044589|Name=TCONS_00044589|organism=Clytia hemisphaerica|type=transcript|length=537bp
taataatgtataaaaaataaagaagggAGGGGATAGGTGCCTTTATAACT
CAGGTGGAAAACTCAGTGAGAATATAAGCATGAAGATGTTTTTTGAAGGT
AGATTTTGATACTTGATGGAATGGAGGTATATGAGGGTGAATATTGTTCC
AATCTTTTGTGATCAAATTGGGGATGTTGTAGGAACCATACGTTACCGTG
TTCGTCATTTTGATGTTAAGAACGTTACCAGCAGCTCTTGTTCTGATTTG
ATGATTATGACCTAAAGGTGATAGAAAGTCTTTAAAGTATTTGGGTAGAT
TACCTTTGAGAAAGTCGTAGGCAAAGAGACAGTTTTTCAGTTTAATTTGT
CTTGGAATTGGAAGAATCCTGCAATTAACATAAAGCGGTTTGACGTTATC
TCTGGGTCCTTTGAAATGTATTATTCTAATGACCTTGTTCTGCAGCTTTT
CGATCTTGTCTAGGATACCTACCTTGATGTGGCCAAGTGGTTGTAAGCAG
TAGTTGATGTGAGAATCAAATAAAGCATAGTAGACAG
Run BLAST on NCBI

protein sequence of TCONS_00044589-protein

>TCONS_00044589-protein ID=TCONS_00044589-protein|Name=TCONS_00044589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
VYYALFDSHINYCLQPLGHIKVGILDKIEKLQNKVIRIIHFKGPRDNVKP
LYVNCRILPIPRQIKLKNCLFAYDFLKGNLPKYFKDFLSPLGHNHQIRTR
AAGNVLNIKMTNTVTYGSYNIPNLITKDWNNIHPHIPPFHQVSKSTFKKH
LHAYILTEFST
Run BLAST on NCBI

transcript from alignment at sc0005848:105..641

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044589 ID=TCONS_00044589|Name=TCONS_00044589|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at sc0005848:105..641 (Clytia hemisphaerica)
CTGTCTACTATGCTTTATTTGATTCTCACATCAACTACTGCTTACAACCA
CTTGGCCACATCAAGGTAGGTATCCTAGACAAGATCGAAAAGCTGCAGAA
CAAGGTCATTAGAATAATACATTTCAAAGGACCCAGAGATAACGTCAAAC
CGCTTTATGTTAATTGCAGGATTCTTCCAATTCCAAGACAAATTAAACTG
AAAAACTGTCTCTTTGCCTACGACTTTCTCAAAGGTAATCTACCCAAATA
CTTTAAAGACTTTCTATCACCTTTAGGTCATAATCATCAAATCAGAACAA
GAGCTGCTGGTAACGTTCTTAACATCAAAATGACGAACACGGTAACGTAT
GGTTCCTACAACATCCCCAATTTGATCACAAAAGATTGGAACAATATTCA
CCCTCATATACCTCCATTCCATCAAGTATCAAAATCTACCTTCAAAAAAC
ATCTTCATGCTTATATTCTCACTGAGTTTTCCACCTGAGTTATAAAGGCA
CCTATCCCCTcccttctttattttttatacattatta

Coding sequence (CDS) from alignment at sc0005848:105..641

>TCONS_00044589 ID=TCONS_00044589|Name=TCONS_00044589|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0005848:105..641 (Clytia hemisphaerica)
GTCTACTATGCTTTATTTGATTCTCACATCAACTACTGCTTACAACCACT
TGGCCACATCAAGGTAGGTATCCTAGACAAGATCGAAAAGCTGCAGAACA
AGGTCATTAGAATAATACATTTCAAAGGACCCAGAGATAACGTCAAACCG
CTTTATGTTAATTGCAGGATTCTTCCAATTCCAAGACAAATTAAACTGAA
AAACTGTCTCTTTGCCTACGACTTTCTCAAAGGTAATCTACCCAAATACT
TTAAAGACTTTCTATCACCTTTAGGTCATAATCATCAAATCAGAACAAGA
GCTGCTGGTAACGTTCTTAACATCAAAATGACGAACACGGTAACGTATGG
TTCCTACAACATCCCCAATTTGATCACAAAAGATTGGAACAATATTCACC
CTCATATACCTCCATTCCATCAAGTATCAAAATCTACCTTCAAAAAACAT
CTTCATGCTTATATTCTCACTGAGTTTTCCACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028208XLOC_028208Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044589-proteinTCONS_00044589-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044589-exon-sc0005848-1491911889:105..641TCONS_00044589-exon-sc0005848-1491911889:105..641Clytia hemisphaericaexon
TCONS_00044589-exon-sc0005848-1510915933:105..641TCONS_00044589-exon-sc0005848-1510915933:105..641Clytia hemisphaericaexon
TCONS_00044589-exon-sc0005848-1575043694:105..641TCONS_00044589-exon-sc0005848-1575043694:105..641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005848supercontigsc0005848:105..641 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216328	0.632861	1.34716	0.958532	1.31279	0.806851	0.695309	1.0415	0.638033	0.903208	0.438338	0.21611	2.08615	1.71825	0.429933	0.395472	0.487189	0.665804	0	0.240638	0.313737	0.30606	0.124019	0.225502	0.116131	1.45101	0.593256	0.31657	0.240107	0.244631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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