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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044580 ID=TCONS_00044580|Name=TCONS_00044580|organism=Clytia hemisphaerica|type=transcript|length=737bp
cagcAAACTGTCCAGAAAACGACCAAATGCTTCGAAGCTGACTCATTCAT
TGAAAGTCACTCTTGCAAAAAAGAGAGGTGATGATTTTGagTTTCTGAAA
GAGAAGTATATTACAATCGGTGAAGATAATTGTAACGTGGACAGCATTAC
AAGGAAAACGAGAGTAGAATTTGGCAATCAATCACTTGTCCTGTTTAGTT
CCTCTGGAAAGGAGATTTTAGATTCTGAGGGGACAAGAGaattatatttt
tggaaaaagccGGCCCGAAAAGTCTTTGCAGCAACTgaagaacaaaaaga
agaaggctCAAGTCCTCCATCCATCCCCCCAAAAATTGACAACATCGAAA
GCAATGTTCAAGCCATCCTTGACCtcatgaagaaaaaagaagaaaataat
acaGCACTTTTCAAAGCACTGAAAGAGGCACTCGAGTGCCGCGTGTGTCG
TGATCCGATAGTAACACCACCGTTACTTTACTCGAATTGCTGTAAACAAT
TGATAACATGTAAAGAGTGCATTGGAAGATTGGGTGCCACTCCTTCATGC
CCAAATTGTCGAAGTCCAGATCTGTCCACATTCCCAAATCACACATTTGA
TGCAATCCTTCCGATCATGGCAGCCCTAATCGCAAACGAAAGCTGAGACA
AATCAAGCACACGAATATCTTATGTTTTTagaaagtatttttatattttt
tcgaaaaaagtgaaagtaaatTAACAAAATGTTTGTC Run BLAST on NCBI protein sequence of TCONS_00044580-protein >TCONS_00044580-protein ID=TCONS_00044580-protein|Name=TCONS_00044580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
SKLSRKRPNASKLTHSLKVTLAKKRGDDFEFLKEKYITIGEDNCNVDSIT
RKTRVEFGNQSLVLFSSSGKEILDSEGTRELYFWKKPARKVFAATEEQKE
EGSSPPSIPPKIDNIESNVQAILDLMKKKEENNTALFKALKEALECRVCR
DPIVTPPLLYSNCCKQLITCKECIGRLGATPSCPNCRSPDLSTFPNHTFD
AILPIMAALIANES Run BLAST on NCBI transcript from alignment at sc0005826:26..1970+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044580 ID=TCONS_00044580|Name=TCONS_00044580|organism=Clytia hemisphaerica|type=transcript|length=1945bp|location=Sequence derived from alignment at sc0005826:26..1970+ (Clytia hemisphaerica)
cagcAAACTGTCCAGAAAACGACCAAATGCTTCGAAGCTGACTCATTCAT
TGAAAGTCACTCTTGCAAAAAAGAGAGGTGATGATTTTGGTGAGTTTTTT
TGGTAATTTCTAATTTCCCTCACGAGACTAAGATAGCAAGGAACTAAATT
GCCTAATAAAATGAAATCTTGAACTGTGAATATCATTTTCGTTGTATTTA
ATAGAGAGGGTTTGACCTCTTGTCAATTTAGCTAAAAtgtgttattatta
tttttagagTTTCTGAAAGAGAAGTATATTACAATCGGTGAAGATAATTG
TAACGTGGACAGCATTACAAGGAAAACGAGAGTAGAATTTGGCAATCAAT
CACTTGTCCTGTTTAGTTCCTCTGGAAAGGAGATTTTAGATTCTGAGGGG
ACAAGAGGTACGATTTCGCATTTTTTATAAAGTAGATATTTCTAATAATT
AAAAAACCTAGATTTACGTACATGCAAAAAAGGCTTTGGATATCAATCGA
CAATTGAAACTTTGTTTGTCTAGTCTGGAATAATTAACGAAATTTACGAG
AAATATCAGCTGATTGGNTTTCTAATAATTAAAAAACCTAGATTTACGTA
CATGCAAAAAAGGCTTTGGATATCAATCGACAATTGAAACTTTGTTTGTC
TAGTCTGGAATAATTAACGAGATTTACGAGAAATATCAGCtgattggaaa
aatatttttcttgtacacaaaggccttttttgataaatttgctCTTACTA
ATGAGAGTCGAGAGAAGCACGAggtacttttttttcaaaatgcacgtttt
ttttataaagatacCTTAACTtagctctgagcctggagttccttattttt
caagagaatttcagcctcaaagttccttaatcgagttccttacttctgta
taaataatttttctttttgacacATTGAATGTAGTTTTCAGCAACAATTT
GTCATCTTTTTGTTTAGGTTATTAGAAAAGTGTGAAAGTTCAAGTTTTAC
CCAACTGTTCCTTAACTTGATTTCTTATTCTGAACTtgggcagttcctta
acaattccttattttttggaccattttcagcctcaagttccttttaaacg
tgttccttataaaaaaacgtgcattaatatttaaaatttttcttttctgt
gttttagaattatatttttggaaaaagccGGCCCGAAAAGTCTTTGCAGC
AACTgaagaacaaaaagaagaaggctCAAGTCCTCCATCCATCCCCCCAA
AAATTGGTTAGTTTGAGTTTTATATCCTTATAAGTGTCCTGATTCAATGA
TGTTAGATTAGATACCATAGTTCATTTATAATAAACTATACTCTTCCAGG
AATTCCTATTTTCCTGCGAAACAATTTGGTAAGAGTTCCAATGATTAAAA
GAAACAAGCTTTTTGATTATTGCttttcatgaaaaacattcaTTTCATAA
CATTCTTATATCATATGTATAATATTCTGCTTTAAAGGTAGCTACTATAA
TAATAAAAGTGaaataatgttttaaaaatatggTTTTTCCTCTTAGACAA
CATCGAAAGCAATGTTCAAGCCATCCTTGACCtcatgaagaaaaaagaag
aaaataatacaGCACTTTTCAAAGCACTGAAAGAGGCACTCGAGTGCCGC
GTGTGTCGTGATCCGATAGTAACACCACCGTTACTTTACTCGAATTGCTG
TAAACAATTGATAACATGTAAAGAGTGCATTGGAAGATTGGGTGCCACTC
CTTCATGCCCAAATTGTCGAAGTCCAGATCTGTCCACATTCCCAAATCAC
ACATTTGATGCAATCCTTCCGATCATGGCAGCCCTAATCGCAAACGAAAG
CTGAGACAAATCAAGCACACGAATATCTTATGTTTTTagaaagtattttt
atattttttcgaaaaaagtgaaagtaaatTAACAAAATGTTTGTC Coding sequence (CDS) from alignment at sc0005826:26..1970+ >TCONS_00044580 ID=TCONS_00044580|Name=TCONS_00044580|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at sc0005826:26..1970+ (Clytia hemisphaerica)
agcAAACTGTCCAGAAAACGACCAAATGCTTCGAAGCTGACTCATTCATT
GAAAGTCACTCTTGCAAAAAAGAGAGGTGATGATTTTGagTTTCTGAAAG
AGAAGTATATTACAATCGGTGAAGATAATTGTAACGTGGACAGCATTACA
AGGAAAACGAGAGTAGAATTTGGCAATCAATCACTTGTCCTGTTTAGTTC
CTCTGGAAAGGAGATTTTAGATTCTGAGGGGACAAGAGaattatattttt
ggaaaaagccGGCCCGAAAAGTCTTTGCAGCAACTgaagaacaaaaagaa
gaaggctCAAGTCCTCCATCCATCCCCCCAAAAATTGACAACATCGAAAG
CAATGTTCAAGCCATCCTTGACCtcatgaagaaaaaagaagaaaataata
caGCACTTTTCAAAGCACTGAAAGAGGCACTCGAGTGCCGCGTGTGTCGT
GATCCGATAGTAACACCACCGTTACTTTACTCGAATTGCTGTAAACAATT
GATAACATGTAAAGAGTGCATTGGAAGATTGGGTGCCACTCCTTCATGCC
CAAATTGTCGAAGTCCAGATCTGTCCACATTCCCAAATCACACATTTGAT
GCAATCCTTCCGATCATGGCAGCCCTAATCGCAAACGAAAGCTGAagcAA
ACTGTCCAGAAAACGACCAAATGCTTCGAAGCTGACTCATTCATTGAAAG
TCACTCTTGCAAAAAAGAGAGGTGATGATTTTGagTTTCTGAAAGAGAAG
TATATTACAATCGGTGAAGATAATTGTAACGTGGACAGCATTACAAGGAA
AACGAGAGTAGAATTTGGCAATCAATCACTTGTCCTGTTTAGTTCCTCTG
GAAAGGAGATTTTAGATTCTGAGGGGACAAGAGaattatatttttggaaa
aagccGGCCCGAAAAGTCTTTGCAGCAACTgaagaacaaaaagaagaagg
ctCAAGTCCTCCATCCATCCCCCCAAAAATTGACAACATCGAAAGCAATG
TTCAAGCCATCCTTGACCtcatgaagaaaaaagaagaaaataatacaGCA
CTTTTCAAAGCACTGAAAGAGGCACTCGAGTGCCGCGTGTGTCGTGATCC
GATAGTAACACCACCGTTACTTTACTCGAATTGCTGTAAACAATTGATAA
CATGTAAAGAGTGCATTGGAAGATTGGGTGCCACTCCTTCATGCCCAAAT
TGTCGAAGTCCAGATCTGTCCACATTCCCAAATCACACATTTGATGCAAT
CCTTCCGATCATGGCAGCCCTAATCGCAAACGAAAGCTGAagcAAACTGT
CCAGAAAACGACCAAATGCTTCGAAGCTGACTCATTCATTGAAAGTCACT
CTTGCAAAAAAGAGAGGTGATGATTTTGagTTTCTGAAAGAGAAGTATAT
TACAATCGGTGAAGATAATTGTAACGTGGACAGCATTACAAGGAAAACGA
GAGTAGAATTTGGCAATCAATCACTTGTCCTGTTTAGTTCCTCTGGAAAG
GAGATTTTAGATTCTGAGGGGACAAGAGaattatatttttggaaaaagcc
GGCCCGAAAAGTCTTTGCAGCAACTgaagaacaaaaagaagaaggctCAA
GTCCTCCATCCATCCCCCCAAAAATTGACAACATCGAAAGCAATGTTCAA
GCCATCCTTGACCtcatgaagaaaaaagaagaaaataatacaGCACTTTT
CAAAGCACTGAAAGAGGCACTCGAGTGCCGCGTGTGTCGTGATCCGATAG
TAACACCACCGTTACTTTACTCGAATTGCTGTAAACAATTGATAACATGT
AAAGAGTGCATTGGAAGATTGGGTGCCACTCCTTCATGCCCAAATTGTCG
AAGTCCAGATCTGTCCACATTCCCAAATCACACATTTGATGCAATCCTTC
CGATCATGGCAGCCCTAATCGCAAACGAAAGCTGAagcAAACTGTCCAGA
AAACGACCAAATGCTTCGAAGCTGACTCATTCATTGAAAGTCACTCTTGC
AAAAAAGAGAGGTGATGATTTTGagTTTCTGAAAGAGAAGTATATTACAA
TCGGTGAAGATAATTGTAACGTGGACAGCATTACAAGGAAAACGAGAGTA
GAATTTGGCAATCAATCACTTGTCCTGTTTAGTTCCTCTGGAAAGGAGAT
TTTAGATTCTGAGGGGACAAGAGaattatatttttggaaaaagccGGCCC
GAAAAGTCTTTGCAGCAACTgaagaacaaaaagaagaaggctCAAGTCCT
CCATCCATCCCCCCAAAAATTGACAACATCGAAAGCAATGTTCAAGCCAT
CCTTGACCtcatgaagaaaaaagaagaaaataatacaGCACTTTTCAAAG
CACTGAAAGAGGCACTCGAGTGCCGCGTGTGTCGTGATCCGATAGTAACA
CCACCGTTACTTTACTCGAATTGCTGTAAACAATTGATAACATGTAAAGA
GTGCATTGGAAGATTGGGTGCCACTCCTTCATGCCCAAATTGTCGAAGTC
CAGATCTGTCCACATTCCCAAATCACACATTTGATGCAATCCTTCCGATC
ATGGCAGCCCTAATCGCAAACGAAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044580-exon-sc0005826-1491911889:26..114 | TCONS_00044580-exon-sc0005826-1491911889:26..114 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1510915933:26..114 | TCONS_00044580-exon-sc0005826-1510915933:26..114 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1575043694:26..114 | TCONS_00044580-exon-sc0005826-1575043694:26..114 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1491911889:283..432 | TCONS_00044580-exon-sc0005826-1491911889:283..432 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1510915933:283..432 | TCONS_00044580-exon-sc0005826-1510915933:283..432 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1575043694:283..432 | TCONS_00044580-exon-sc0005826-1575043694:283..432 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1491911889:1183..1281 | TCONS_00044580-exon-sc0005826-1491911889:1183..1281 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1510915933:1183..1281 | TCONS_00044580-exon-sc0005826-1510915933:1183..1281 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1575043694:1183..1281 | TCONS_00044580-exon-sc0005826-1575043694:1183..1281 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1491911889:1572..1970 | TCONS_00044580-exon-sc0005826-1491911889:1572..1970 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1510915933:1572..1970 | TCONS_00044580-exon-sc0005826-1510915933:1572..1970 | Clytia hemisphaerica | exon |
| TCONS_00044580-exon-sc0005826-1575043694:1572..1970 | TCONS_00044580-exon-sc0005826-1575043694:1572..1970 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005826 | supercontig | sc0005826:26..1970 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001841 | Znf_RING |
Blast
The following BLAST results are available for this feature:
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