TCONS_00044561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044561
Unique NameTCONS_00044561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044561 ID=TCONS_00044561|Name=TCONS_00044561|organism=Clytia hemisphaerica|type=transcript|length=969bp
AAGTCTAACACGGAAAAAGCACGACGACCTCTTTTAGGAAAACAGGTGCT
TCGCTATGATGAAGATCACATTCTTATGCAGTTACTTAACAACTTTCTTT
CTCCATTACAGCTCTATTAGCATTCATGGCCACACATCCGAAAACAGGAA
TACGAATCGGCAACAAACCTTCGGCCATCGAACTTTTAATCTTCGTCTGG
ATTTTCAGTTTGTTTTGCCAAGAAGTCAAGCAGATGAAAAATATGGGCAA
AAAGCAATATTTCGGTTCAGGATGGAATTGGATTGACATCAATATGATCG
GCCTCGTTTTCGTGTCATACTCAATGTGGGTCATTATGTACTTCGTTAAT
CCTGAACACAAAGACGATCACTACACATTTATTTTGAGCTTTCCTGAAAG
TTTTTTCGCAGTTGCCATCATTTTGAGTTACTTTCGTATGGTGTGTTTAT
GTCAAATCACAAGATATCTTGGATTGCTACAACTCTGTCTTGGAAGAATG
TTGCAGGTGTTGTTTCAGTTCGCTTTCATTAGTATTGTGATTCTGTGTTC
GTTCTCCGTCGGTTTGGTCTTTTTGTTTCATTCATCCAAGCATTATGATT
CCATGGTTGTGAAAATGTCTCANCAATCCTGAACACAAAGACGATCACTA
CACATTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAGTTGCCATCATTT
TGAGTTACTTTCGTATGGTTTGTTTATGTCAAATCACAAGATATCTTGGA
TTGCTACAACTCTGTCTTGGAAGAATGTTACAGGTGTTGTTTCAGTTCGC
TTTCATCAGTATTGTGATTCTGTGTTCGTTCTCCGTCGGTTTGGTCTTTT
TGTTTCATTCATCCAAGCATTATGATTCCATGGTTGTGAAAATGTCTCAA
ACTGGTGAAAATGGAACTTATGTCAACCAAATGTTGAGTGGGCGTTACAA
CGGGTAAGTGAGAGGGGAC
Run BLAST on NCBI

protein sequence of TCONS_00044561-protein

>TCONS_00044561-protein ID=TCONS_00044561-protein|Name=TCONS_00044561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MATHPKTGIRIGNKPSAIELLIFVWIFSLFCQEVKQMKNMGKKQYFGSGW
NWIDINMIGLVFVSYSMWVIMYFVNPEHKDDHYTFILSFPESFFAVAIIL
SYFRMVCLCQITRYLGLLQLCLGRMLQVLFQFAFISIVILCSFSVGLVFL
FHSSKHYDSMVVKMSXQS
Run BLAST on NCBI

transcript from alignment at sc0005788:685..2729+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044561 ID=TCONS_00044561|Name=TCONS_00044561|organism=Clytia hemisphaerica|type=transcript|length=2045bp|location=Sequence derived from alignment at sc0005788:685..2729+ (Clytia hemisphaerica)
AAGTCTAACACGGAAAAAGCACGACGACCTCTTTTAGGAAAACAGGTGCT
TCGCTATGATGAAGATCACATTCTTATGCAGTTACTTAACAACTTTCTTT
CTCCATTACAGCTCTATTAGCATTCATGGCCACACATCCGAAAACAGGAA
TACGAATCGGCAACAAACCTTCGGCCATCGAACTTTTAATCTTCGTCTGG
ATTTTCAGTTTGTTTTGCCAAGAAGTCAAGCAGGTGAGATTGAAATGTTG
GAAAGACTTGAAAAGGGTTTGAACATTCAATATATTGCTCAAGTGACAAG
TCTATGCACTTTCCTGTTATCTTTTCATGCCTGAAAAGGTATATCATGAC
ATACATTGCAAAAtacagtttttttttacttatatcTGAATTCAGTTGAC
ACACAGtattataattattatattGACGTTAGAATGACGTTTCTTTCGCG
TTTAGATGGGAGTCGGGAATAGAAACCAGCCCCCACCTTTCCACAGCAAA
ATCATACAATACTAATTACATGGTTTTTCTTTTAGATGAAAAATATGGGC
AAAAAGCAATATTTCGGTTCAGGATGGAATTGGATTGACATCAATATGAN
CCCCCATCTTTCCACAGCAAAATCATACAATACTAATTACATGGTTTTTC
TTTTAGATGAAAAATATGGGCAAAAAGCAATATTTCGGTTCAGGATGGAA
TTGGATTGACATCAATATGATCGGCCTCGTTTTCGTGTCATACTCAATGT
GGGTCATTATGTACTTCGTTAATCCTGAACACAAAGACGATCACTACACA
TTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAGTTGCCATCATTTTGAG
TTACTTTCGTATGGTGTGTTTATGTCAAATCACAAGATATCTTGGATTGC
TACAACTCTGTCTTGGAAGAATGTTGCAGGTAGGAATTGGCCCTCTCTCC
AATTAAATTTTCTTATAGAAACCAGTATATTTCGAGTGAGCCCtcacttt
tctcaaaatttagaGATGATTTTACAAAGGTTTTTCTTCCTCCCTCGAGG
ACTTACAGGTTGTGTAAGTTCTTAGCTGTTTCTGAAATCTTTTAGGTTAT
GGCCACATGAAAGCCTTTAAACGAAGGTACCTTTGTTATGGTATGAATTA
AAcgttttaatttattttcaggTGTTATTCCTGAAATCAGAGACTGaaca
atttttctgaaaattttttaggCTATGGCCAcatgaagatttttaaacga
GGGTACCTTGGCTATGGTATGAATAAGACGTTAAATAATTCTATCACTGT
GTAATTTATTTTCAGGTGTTGTTTCAGTTCGCTTTCATTAGTATTGTGAT
TCTGTGTTCGTTCTCCGTCGGTTTGGTCTTTTTGTTTCATTCATCCAAGC
ATTATGATTCCATGGTTGTGAAAATGTCTCANCAATCCTGAACACAAAGA
CGATCACTACACATTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAGTTG
CCATCATTTTGAGTTACTTTCGTATGGTTTGTTTATGTCAAATCACAAGA
TATCTTGGATTGCTACAACTCTGTCTTGGAAGAATGTTACAGGTAGGAAT
GCCCTCTCtccaatcaaacaatttttatagAAACCAGTAGATTTCGAGTG
AGCGTCCACTTTTCTCGAAATTTAGAGATGATTTTACAAAGGTTTTTCTT
CCTCTTTCTTTCCTGTAGGACCTACAGGTTGTGTAAGTTCTTAGctgttt
ctgaaaattttttaggCTATGGCCACATGAAAGCCTTTAAACGAAGGTAC
CTTGGTTATGGTATAAATAAGACGTTAAATAATTCTATCACTGTGTAATT
TATTTTCAGGTGTTGTTTCAGTTCGCTTTCATCAGTATTGTGATTCTGTG
TTCGTTCTCCGTCGGTTTGGTCTTTTTGTTTCATTCATCCAAGCATTATG
ATTCCATGGTTGTGAAAATGTCTCAAACTGGTGAAAATGGAACTTATGTC
AACCAAATGTTGAGTGGGCGTTACAACGGGTAAGTGAGAGGGGAC

Coding sequence (CDS) from alignment at sc0005788:685..2729+

>TCONS_00044561 ID=TCONS_00044561|Name=TCONS_00044561|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0005788:685..2729+ (Clytia hemisphaerica)
ATGGCCACACATCCGAAAACAGGAATACGAATCGGCAACAAACCTTCGGC
CATCGAACTTTTAATCTTCGTCTGGATTTTCAGTTTGTTTTGCCAAGAAG
TCAAGCAGATGAAAAATATGGGCAAAAAGCAATATTTCGGTTCAGGATGG
AATTGGATTGACATCAATATGATCGGCCTCGTTTTCGTGTCATACTCAAT
GTGGGTCATTATGTACTTCGTTAATCCTGAACACAAAGACGATCACTACA
CATTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAGTTGCCATCATTTTG
AGTTACTTTCGTATGGTGTGTTTATGTCAAATCACAAGATATCTTGGATT
GCTACAACTCTGTCTTGGAAGAATGTTGCAGGTGTTGTTTCAGTTCGCTT
TCATTAGTATTGTGATTCTGTGTTCGTTCTCCGTCGGTTTGGTCTTTTTG
TTTCATTCATCCAAGCATTATGATTCCATGGTTGTGAAAATGTCTCANCA
ATCCTGAATGGCCACACATCCGAAAACAGGAATACGAATCGGCAACAAAC
CTTCGGCCATCGAACTTTTAATCTTCGTCTGGATTTTCAGTTTGTTTTGC
CAAGAAGTCAAGCAGATGAAAAATATGGGCAAAAAGCAATATTTCGGTTC
AGGATGGAATTGGATTGACATCAATATGATCGGCCTCGTTTTCGTGTCAT
ACTCAATGTGGGTCATTATGTACTTCGTTAATCCTGAACACAAAGACGAT
CACTACACATTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAGTTGCCAT
CATTTTGAGTTACTTTCGTATGGTGTGTTTATGTCAAATCACAAGATATC
TTGGATTGCTACAACTCTGTCTTGGAAGAATGTTGCAGGTGTTGTTTCAG
TTCGCTTTCATTAGTATTGTGATTCTGTGTTCGTTCTCCGTCGGTTTGGT
CTTTTTGTTTCATTCATCCAAGCATTATGATTCCATGGTTGTGAAAATGT
CTCANCAATCCTGAATGGCCACACATCCGAAAACAGGAATACGAATCGGC
AACAAACCTTCGGCCATCGAACTTTTAATCTTCGTCTGGATTTTCAGTTT
GTTTTGCCAAGAAGTCAAGCAGATGAAAAATATGGGCAAAAAGCAATATT
TCGGTTCAGGATGGAATTGGATTGACATCAATATGATCGGCCTCGTTTTC
GTGTCATACTCAATGTGGGTCATTATGTACTTCGTTAATCCTGAACACAA
AGACGATCACTACACATTTATTTTGAGCTTTCCTGAAAGTTTTTTCGCAG
TTGCCATCATTTTGAGTTACTTTCGTATGGTGTGTTTATGTCAAATCACA
AGATATCTTGGATTGCTACAACTCTGTCTTGGAAGAATGTTGCAGGTGTT
GTTTCAGTTCGCTTTCATTAGTATTGTGATTCTGTGTTCGTTCTCCGTCG
GTTTGGTCTTTTTGTTTCATTCATCCAAGCATTATGATTCCATGGTTGTG
AAAATGTCTCANCAATCCTGAATGGCCACACATCCGAAAACAGGAATACG
AATCGGCAACAAACCTTCGGCCATCGAACTTTTAATCTTCGTCTGGATTT
TCAGTTTGTTTTGCCAAGAAGTCAAGCAGATGAAAAATATGGGCAAAAAG
CAATATTTCGGTTCAGGATGGAATTGGATTGACATCAATATGATCGGCCT
CGTTTTCGTGTCATACTCAATGTGGGTCATTATGTACTTCGTTAATCCTG
AACACAAAGACGATCACTACACATTTATTTTGAGCTTTCCTGAAAGTTTT
TTCGCAGTTGCCATCATTTTGAGTTACTTTCGTATGGTGTGTTTATGTCA
AATCACAAGATATCTTGGATTGCTACAACTCTGTCTTGGAAGAATGTTGC
AGGTGTTGTTTCAGTTCGCTTTCATTAGTATTGTGATTCTGTGTTCGTTC
TCCGTCGGTTTGGTCTTTTTGTTTCATTCATCCAAGCATTATGATTCCAT
GGTTGTGAAAATGTCTCANCAATCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028180XLOC_028180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044561-exon-sc0005788-1491911889:685..917TCONS_00044561-exon-sc0005788-1491911889:685..917Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1510915933:685..917TCONS_00044561-exon-sc0005788-1510915933:685..917Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1575043694:685..917TCONS_00044561-exon-sc0005788-1575043694:685..917Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1491911889:1220..1273TCONS_00044561-exon-sc0005788-1491911889:1220..1273Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1510915933:1220..1273TCONS_00044561-exon-sc0005788-1510915933:1220..1273Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1575043694:1220..1273TCONS_00044561-exon-sc0005788-1575043694:1220..1273Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1491911889:1395..1613TCONS_00044561-exon-sc0005788-1491911889:1395..1613Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1510915933:1395..1613TCONS_00044561-exon-sc0005788-1510915933:1395..1613Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1575043694:1395..1613TCONS_00044561-exon-sc0005788-1575043694:1395..1613Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1491911889:2000..2276TCONS_00044561-exon-sc0005788-1491911889:2000..2276Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1510915933:2000..2276TCONS_00044561-exon-sc0005788-1510915933:2000..2276Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1575043694:2000..2276TCONS_00044561-exon-sc0005788-1575043694:2000..2276Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1491911889:2544..2729TCONS_00044561-exon-sc0005788-1491911889:2544..2729Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1510915933:2544..2729TCONS_00044561-exon-sc0005788-1510915933:2544..2729Clytia hemisphaericaexon
TCONS_00044561-exon-sc0005788-1575043694:2544..2729TCONS_00044561-exon-sc0005788-1575043694:2544..2729Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044561-proteinTCONS_00044561-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005788supercontigsc0005788:685..2729 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0227608	0.0792823	0.258551	0.0314761	0	0.120032	0.224745	0.354036	0	0.0709415	0.435252	0.729586	0	0.0397607	0.0568925	0	0	0	0	0.490027	1.7832	0.642285	1.14353	0.701674	0.603862	2.64572	0.000166159	0	0.0791832
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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