TCONS_00044525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044525
Unique NameTCONS_00044525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044525 ID=TCONS_00044525|Name=TCONS_00044525|organism=Clytia hemisphaerica|type=transcript|length=1622bp
AAGAAACCGgattttttggttagattttcgattttcattgtccTGAAGGG
TTGCACTAATCACCTGTAAAATTTCAGCCATGAGGCTCATGACCTAAATT
TAAGCccttttttgacctcttttttgggctcgtggagaACAAAGAGACCG
CTAGTGTTCGAtctgacaaaacttttttgacagttttcgatACGGCGAAC
ACGTTGAGGATGGTTAAAATTCTGAGGCTTATGACCTAATAAAAAGGCCG
ACAGCTCTCGAACTATTTGTTTATAATGCACTAGACTGTTATCCTTAACT
CTTGTATAGGATTTTGTTGCAGCATATGGCCAAGATTTGGTAGTCGTCCA
AGAAATGTTGAAAAACATGAAATCGATGTTCCAAGAATTAGTTGAATATT
ATTGTCTAGATCCAAAGAAGACAAATATGGATGAATTCTTTGCTATTGTT
TACAAGTTCTGTCTGGAATATGCTAAAGCACAAGAAGACAATATGAAGCG
GAAAGAGAAGGAAGAAAAAGAGAGGAAAGCAAGAGAAAAGGCTGAGAACG
ATCGACGTAAGAAAGAGGAAGCGAAGAACAAAACGAATCGCAAACCCAAT
CTTTTGGATGCTGCTGGTGACGATGAAGGTGTTTTGGATGGCCTCATGCA
AGCTCTGGAAACTGGCTCTGCTTTCAGAGATCCTTCACGACCTGCTCGAA
GAAGACAACCCAGAAAAGCACGAACGAACAAAGCTGATTTGGAGCGTAAG
AGCACACGTGTAAACATCGTACCTATTCAATTGTTAAACCCCGGTGATAA
ATTGTCTGATAAATTGAAAGCTACTAAAGAAGGAGAATCCGAAATGCTAT
AAACGGATTAAACGGAATCGNCGATAAATTGAAAGCTACTAAAGAAGGAG
AATCCGAAATGCTGTAAACGGATTAAACGGAATGGTTTATCGGTTTGTTG
TAGGGTAATATTGTCAGTCCCTGAGAGTTTGAATATGATATCATGAATTA
ATCTGAAAATATATGATTCTCAAAATATATGATTCTGCTATGGAGCACGA
TATTGGTTAGAGTGTCAATCCAATTTTTATTCCTATCAGCAGGCGGAAGA
GATTTTCGTGTGCGTGTAAGTCTGGTGACTTATATGTGTAAATCATAATG
AAAACGAacaaattttttattgcaagagaaatgatttaaaaatagttttt
gcagttttttggAACTGTGAAACTTTCTAGACATTGTTGTAAAACTAAGA
GCGGAATTCCTTTTTTATTGATTCTATCTATACTTTAATTAATTTATGAA
TATTAATAGGGTGTCTTTCTAGGACCCATATCCTTTTTTCTTCACACTGC
AAAGATATAGAAATACGCTTTTCGCACCTTATATTACTTTTACAGCCGAT
AGAGAAATCTTAAAACTTTTGTGGTCGTTCTTAGGCTTTATCACAATATA
ATATTTCATCTGAAAATATTCGTATTATTGTGGTTAAGTATATTCTGATC
CTAAGCTATCCGATATCTCAAAGTGAAGATAATGCCTTAAATCGTTTTTT
CTCGAACACTTTTTCGTTAGGAAAatttaacacaaaattttttgtttgtt
tttatgtttaaagAAAATTCAT
Run BLAST on NCBI

protein sequence of TCONS_00044525-protein

>TCONS_00044525-protein ID=TCONS_00044525-protein|Name=TCONS_00044525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MLKNMKSMFQELVEYYCLDPKKTNMDEFFAIVYKFCLEYAKAQEDNMKRK
EKEEKERKAREKAENDRRKKEEAKNKTNRKPNLLDAAGDDEGVLDGLMQA
LETGSAFRDPSRPARRRQPRKARTNKADLERKSTRVNIVPIQLLNPGDKL
SDKLKATKEGESEML
Run BLAST on NCBI

transcript from alignment at sc0005726:1674..3799+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044525 ID=TCONS_00044525|Name=TCONS_00044525|organism=Clytia hemisphaerica|type=transcript|length=2126bp|location=Sequence derived from alignment at sc0005726:1674..3799+ (Clytia hemisphaerica)
AAGAAACCGgattttttggttagattttcgattttcattgtccTGAAGGG
TTGCACTAATCACCTGTAAAATTTCAGCCATGAGGCTCATGACCTAAATT
TAAGCccttttttgacctcttttttgggctcgtggagaACAAAGAGACCG
CTAGTGTTCGAtctgacaaaacttttttgacagttttcgatACGGCGAAC
ACGTTGAGGATGGTTAAAATTCTGAGGCTTATGACCTAATAAAAAGGCCG
ACAGCTCTCGAACTATTTGTTTATAATGCACTAGACTGTTATCCTTAACT
CTTGTATAGGATTTTGTTGCAGCATATGGCCAAGATTTGGTAGTCGTCCA
AGAAATGTTGAAAAACATGAAATCGATGTTCCAAGAATTAGTTGAATATT
ATTGTCTAGATCCAAAGAAGACAAATATGGATGAATTCTTTGCTATTGTT
TACAAGTTCTGTCTGGAATATGCTGTAAGTCGAAAAATAACCACATTATT
CTCTGAGTCAGCTTCAAGATGGTACCGTCACTCCTTTTCACCCAACTTCT
TCTTCGTTTATTGTAGAAAGCACAAGAAGACAATATGAAGCGGAAAGAGA
AGGAAGAAAAAGAGAGGAAAGCAAGAGAAAAGGCTGTAAGTTCAACACAC
GTCACTCACCAAACCCTCATTATCGGAGAAGTCAGATATCGGGACTTTGT
CTTGTCTTTGTATAGGGTTACTGGGATAGTGAGCATTGTGAGGGAGGCAG
TAGACACCTAAAATGATTAGATTGGTCTTTTTAACCAAACTTTATTTGTG
TAGGAGAACGATCGACGTAAGAAAGAGGAAGCGAAGAACAAAACGAATCG
CAAACCCAATCTTTTGGATGCTGCTGGTGACGATGAAGGTGTTTTGGATG
GCCTCATGCAAGCTCTGGAAACTGGCTCTGCTTTCAGAGATCCTTCACGA
CCTGCTCGAAGAAGACAACCCAGAAAAGGTTTGAGTACATTTCAATGACC
TGCACAAGTATGGTTACTGGTTAGCTTTCTCTCTTGTCACGCTGCTCTCA
ATACTTTAAAAATTGTCGTTAAACCGATTTATTGGTGAAATCTTTCAGTC
ATTTTCCTCGTACCCTAACACCTCATAGTATAGTAGTTTTGTTCAGTTAT
TTGTAAGTTGatttaaatcttcatttttccctattttcgttTATCTCATG
TTTTGTATACTATGTTTTTTAGCACGAACGAACAAAGCTGATTTGGAGCG
TAAGAGCACACGTGTAAACATCGTACCTATTCAATTGTTAAACCCCGGTG
ATAAATTGTCTGATAAATTGAAAGCTACTAAAGAAGGAGAATCCGAAATG
CTATAAACGGATTAAACGGAATCGNCGATAAATTGAAAGCTACTAAAGAA
GGAGAATCCGAAATGCTGTAAACGGATTAAACGGAATGGTTTATCGGTTT
GTTGTAGGGTAATATTGTCAGTCCCTGAGAGTTTGAATATGATATCATGA
ATTAATCTGAAAATATATGATTCTCAAAATATATGATTCTGCTATGGAGC
ACGATATTGGTTAGAGTGTCAATCCAATTTTTATTCCTATCAGCAGGCGG
AAGAGATTTTCGTGTGCGTGTAAGTCTGGTGACTTATATGTGTAAATCAT
AATGAAAACGAacaaattttttattgcaagagaaatgatttaaaaatagt
ttttgcagttttttggAACTGTGAAACTTTCTAGACATTGTTGTAAAACT
AAGAGCGGAATTCCTTTTTTATTGATTCTATCTATACTTTAATTAATTTA
TGAATATTAATAGGGTGTCTTTCTAGGACCCATATCCTTTTTTCTTCACA
CTGCAAAGATATAGAAATACGCTTTTCGCACCTTATATTACTTTTACAGC
CGATAGAGAAATCTTAAAACTTTTGTGGTCGTTCTTAGGCTTTATCACAA
TATAATATTTCATCTGAAAATATTCGTATTATTGTGGTTAAGTATATTCT
GATCCTAAGCTATCCGATATCTCAAAGTGAAGATAATGCCTTAAATCGTT
TTTTCTCGAACACTTTTTCGTTAGGAAAatttaacacaaaattttttgtt
tgtttttatgtttaaagAAAATTCAT

Coding sequence (CDS) from alignment at sc0005726:1674..3799+

>TCONS_00044525 ID=TCONS_00044525|Name=TCONS_00044525|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0005726:1674..3799+ (Clytia hemisphaerica)
ATGTTGAAAAACATGAAATCGATGTTCCAAGAATTAGTTGAATATTATTG
TCTAGATCCAAAGAAGACAAATATGGATGAATTCTTTGCTATTGTTTACA
AGTTCTGTCTGGAATATGCTAAAGCACAAGAAGACAATATGAAGCGGAAA
GAGAAGGAAGAAAAAGAGAGGAAAGCAAGAGAAAAGGCTGAGAACGATCG
ACGTAAGAAAGAGGAAGCGAAGAACAAAACGAATCGCAAACCCAATCTTT
TGGATGCTGCTGGTGACGATGAAGGTGTTTTGGATGGCCTCATGCAAGCT
CTGGAAACTGGCTCTGCTTTCAGAGATCCTTCACGACCTGCTCGAAGAAG
ACAACCCAGAAAAGCACGAACGAACAAAGCTGATTTGGAGCGTAAGAGCA
CACGTGTAAACATCGTACCTATTCAATTGTTAAACCCCGGTGATAAATTG
TCTGATAAATTGAAAGCTACTAAAGAAGGAGAATCCGAAATGCTATAAAT
GTTGAAAAACATGAAATCGATGTTCCAAGAATTAGTTGAATATTATTGTC
TAGATCCAAAGAAGACAAATATGGATGAATTCTTTGCTATTGTTTACAAG
TTCTGTCTGGAATATGCTAAAGCACAAGAAGACAATATGAAGCGGAAAGA
GAAGGAAGAAAAAGAGAGGAAAGCAAGAGAAAAGGCTGAGAACGATCGAC
GTAAGAAAGAGGAAGCGAAGAACAAAACGAATCGCAAACCCAATCTTTTG
GATGCTGCTGGTGACGATGAAGGTGTTTTGGATGGCCTCATGCAAGCTCT
GGAAACTGGCTCTGCTTTCAGAGATCCTTCACGACCTGCTCGAAGAAGAC
AACCCAGAAAAGCACGAACGAACAAAGCTGATTTGGAGCGTAAGAGCACA
CGTGTAAACATCGTACCTATTCAATTGTTAAACCCCGGTGATAAATTGTC
TGATAAATTGAAAGCTACTAAAGAAGGAGAATCCGAAATGCTATAAATGT
TGAAAAACATGAAATCGATGTTCCAAGAATTAGTTGAATATTATTGTCTA
GATCCAAAGAAGACAAATATGGATGAATTCTTTGCTATTGTTTACAAGTT
CTGTCTGGAATATGCTAAAGCACAAGAAGACAATATGAAGCGGAAAGAGA
AGGAAGAAAAAGAGAGGAAAGCAAGAGAAAAGGCTGAGAACGATCGACGT
AAGAAAGAGGAAGCGAAGAACAAAACGAATCGCAAACCCAATCTTTTGGA
TGCTGCTGGTGACGATGAAGGTGTTTTGGATGGCCTCATGCAAGCTCTGG
AAACTGGCTCTGCTTTCAGAGATCCTTCACGACCTGCTCGAAGAAGACAA
CCCAGAAAAGCACGAACGAACAAAGCTGATTTGGAGCGTAAGAGCACACG
TGTAAACATCGTACCTATTCAATTGTTAAACCCCGGTGATAAATTGTCTG
ATAAATTGAAAGCTACTAAAGAAGGAGAATCCGAAATGCTATAAATGTTG
AAAAACATGAAATCGATGTTCCAAGAATTAGTTGAATATTATTGTCTAGA
TCCAAAGAAGACAAATATGGATGAATTCTTTGCTATTGTTTACAAGTTCT
GTCTGGAATATGCTAAAGCACAAGAAGACAATATGAAGCGGAAAGAGAAG
GAAGAAAAAGAGAGGAAAGCAAGAGAAAAGGCTGAGAACGATCGACGTAA
GAAAGAGGAAGCGAAGAACAAAACGAATCGCAAACCCAATCTTTTGGATG
CTGCTGGTGACGATGAAGGTGTTTTGGATGGCCTCATGCAAGCTCTGGAA
ACTGGCTCTGCTTTCAGAGATCCTTCACGACCTGCTCGAAGAAGACAACC
CAGAAAAGCACGAACGAACAAAGCTGATTTGGAGCGTAAGAGCACACGTG
TAAACATCGTACCTATTCAATTGTTAAACCCCGGTGATAAATTGTCTGAT
AAATTGAAAGCTACTAAAGAAGGAGAATCCGAAATGCTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028148XLOC_028148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044525-exon-sc0005726-1491911889:1674..2147TCONS_00044525-exon-sc0005726-1491911889:1674..2147Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1510915933:1674..2147TCONS_00044525-exon-sc0005726-1510915933:1674..2147Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1575043694:1674..2147TCONS_00044525-exon-sc0005726-1575043694:1674..2147Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1491911889:2240..2308TCONS_00044525-exon-sc0005726-1491911889:2240..2308Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1510915933:2240..2308TCONS_00044525-exon-sc0005726-1510915933:2240..2308Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1575043694:2240..2308TCONS_00044525-exon-sc0005726-1575043694:2240..2308Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1491911889:2477..2651TCONS_00044525-exon-sc0005726-1491911889:2477..2651Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1510915933:2477..2651TCONS_00044525-exon-sc0005726-1510915933:2477..2651Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1575043694:2477..2651TCONS_00044525-exon-sc0005726-1575043694:2477..2651Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1491911889:2896..3799TCONS_00044525-exon-sc0005726-1491911889:2896..3799Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1510915933:2896..3799TCONS_00044525-exon-sc0005726-1510915933:2896..3799Clytia hemisphaericaexon
TCONS_00044525-exon-sc0005726-1575043694:2896..3799TCONS_00044525-exon-sc0005726-1575043694:2896..3799Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044525-proteinTCONS_00044525-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005726supercontigsc0005726:1674..3799 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.9025	24.1323	14.9018	14.3608	62.94	50.7785	63.7836	69.6544	46.2194	54.3945	46.2871	43.2427	48.3873	48.5785	39.2777	40.9488	46.6869	42.6868	38.5015	42.3773	42.2651	41.3133	35.85	36.1586	36.6244	40.7105	47.7245	41.5318	45.9609	47.0173
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015425FH2_Formin
IPR014767DAD_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top