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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044512 ID=TCONS_00044512|Name=TCONS_00044512|organism=Clytia hemisphaerica|type=transcript|length=354bp
GTCGTCTTTGACGTTCCCAAGCATGGTAACCGTGGTGCAGCTACATATCT
CCAAGATTTCATCAATCGTTTGACAGTGATGCGAGATGACGAAGCCAAAA
CATGTTACGTATGGAAGATGAAGAAAGACGAACCAACTCCTGACTCTGTT
CTCAAAGCTCTCAAAAAGGTCAACTACAAGTTCCCCCAAAACCGTTATTG
GATCGAGACTGAAAATATGATTCCAATGCAGCCGTTCGATTTGTCACCTT
ATCCAATCATCGACCAGTTCTGTGACAAGCGAAGAGCATTGGAAGTGAAG
GTCTACGCAAATATCACTGAAATGGAGCGTGAGGTCAAGGCTGACTTATT
GAGT Run BLAST on NCBI protein sequence of TCONS_00044512-protein >TCONS_00044512-protein ID=TCONS_00044512-protein|Name=TCONS_00044512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
VVFDVPKHGNRGAATYLQDFINRLTVMRDDEAKTCYVWKMKKDEPTPDSV
LKALKKVNYKFPQNRYWIETENMIPMQPFDLSPYPIIDQFCDKRRALEVK
VYANITEMEREVKADLLS Run BLAST on NCBI transcript from alignment at sc0005695:314..1266- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044512 ID=TCONS_00044512|Name=TCONS_00044512|organism=Clytia hemisphaerica|type=transcript|length=953bp|location=Sequence derived from alignment at sc0005695:314..1266- (Clytia hemisphaerica)
GTCGTCTTTGACGTTCCCAAGCATGGTAACCGTGGTGCAGCTACATATCT
CCAAGATTTCATCAATGTAAGGAGAATCTAATCAAGTTTTATCTAGGTTT
AGTAGATACCTGCAAGCTTAAGAGGCAAAAAAAATGACCTCTAAGTTAAA
GTAAGAAGATTTTCAATTCGAGTAATTTTCTCAGTAATCTTTAACCGCAG
CATATTTTCTTCCCGAGCCTTTCTAAACTTTTTCAAAAACACTTGATACT
GATAACGATTATTAATATTACGCTACTCTGAGGGTTAGAATTCGGGAAAA
CTGTATCGGACAAGGTTTTAGAGTGTCCGCGTTCTTTAATCATTAAAATA
AAACTGAGGCGAATCCAACGACTTTCCATTTTCTTCAATAGCGTTTGACA
GTGATGCGAGATGACGAAGCCAAAACATGTTACGTATGGAAGATGAAGAA
AGACGAACCAACTCCTGACTCTGTTCTCAAAGCTCTCAAAAAGGTGTGTG
TATGTTCAAACTAAGCCCTTTACCAAGTTCAAGTGTAAAGGCTATTGCTT
ACAAAATACAACAAATTGAATTGTATTGAAATTAATGGTGATTTCTACTA
AAACACTTGCTGCAAAGAAAAAGATTTAAGTTAAGAACTTACCAATAAGT
CATTGGTAATAGAACTACTCATGAACAAAGACGCCCCAGAAGCAACCTCT
ATTTCACAAACGAAACCTTTTAGGTCATTTGAACCGAATTATTAAAAATC
AAACTGCTTTCATTTAGGTCAACTACAAGTTCCCCCAAAACCGTTATTGG
ATCGAGACTGAAAATATGATTCCAATGCAGCCGTTCGATTTGTCACCTTA
TCCAATCATCGACCAGTTCTGTGACAAGCGAAGAGCATTGGAAGTGAAGG
TCTACGCAAATATCACTGAAATGGAGCGTGAGGTCAAGGCTGACTTATTG
AGT Coding sequence (CDS) from alignment at sc0005695:314..1266- >TCONS_00044512 ID=TCONS_00044512|Name=TCONS_00044512|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0005695:314..1266- (Clytia hemisphaerica)
GTCAACTACAAGTTCCCCCAAAACCGTTATTGGATCGAGACTGAAAATAT
GATTCCAATGCAGCCGTTCGATTTGTCACCTTATCCAATCATCGACCAGT
TCTGTGACAAGCGAAGAGCATTGGAAGTGAAGGTCTACGCAAATATCACT
GAAATGGAGCGTGAGGTCAAGGCTGACTTATTGAGTCGTTTGACAGTGAT
GCGAGATGACGAAGCCAAAACATGTTACGTATGGAAGATGAAGAAAGACG
AACCAACTCCTGACTCTGTTCTCAAAGCTCTCAAAAAGGTCGTCTTTGAC
GTTCCCAAGCATGGTAACCGTGGTGCAGCTACATATCTCCAAGATTTCAT
CAATGTCAACTACAAGTTCCCCCAAAACCGTTATTGGATCGAGACTGAAA
ATATGATTCCAATGCAGCCGTTCGATTTGTCACCTTATCCAATCATCGAC
CAGTTCTGTGACAAGCGAAGAGCATTGGAAGTGAAGGTCTACGCAAATAT
CACTGAAATGGAGCGTGAGGTCAAGGCTGACTTATTGAGTCGTTTGACAG
TGATGCGAGATGACGAAGCCAAAACATGTTACGTATGGAAGATGAAGAAA
GACGAACCAACTCCTGACTCTGTTCTCAAAGCTCTCAAAAAGGTCGTCTT
TGACGTTCCCAAGCATGGTAACCGTGGTGCAGCTACATATCTCCAAGATT
TCATCAATGTCAACTACAAGTTCCCCCAAAACCGTTATTGGATCGAGACT
GAAAATATGATTCCAATGCAGCCGTTCGATTTGTCACCTTATCCAATCAT
CGACCAGTTCTGTGACAAGCGAAGAGCATTGGAAGTGAAGGTCTACGCAA
ATATCACTGAAATGGAGCGTGAGGTCAAGGCTGACTTATTGAGTCGTTTG
ACAGTGATGCGAGATGACGAAGCCAAAACATGTTACGTATGGAAGATGAA
GAAAGACGAACCAACTCCTGACTCTGTTCTCAAAGCTCTCAAAAAGGTCG
TCTTTGACGTTCCCAAGCATGGTAACCGTGGTGCAGCTACATATCTCCAA
GATTTCATCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044512-exon-sc0005695-1575043694:1201..1266 | TCONS_00044512-exon-sc0005695-1575043694:1201..1266 | Clytia hemisphaerica | exon |
| TCONS_00044512-exon-sc0005695-1575043694:774..875 | TCONS_00044512-exon-sc0005695-1575043694:774..875 | Clytia hemisphaerica | exon |
| TCONS_00044512-exon-sc0005695-1575043694:314..499 | TCONS_00044512-exon-sc0005695-1575043694:314..499 | Clytia hemisphaerica | exon |
| TCONS_00044512-exon-sc0005695-1510915933:1201..1266 | TCONS_00044512-exon-sc0005695-1510915933:1201..1266 | Clytia hemisphaerica | exon |
| TCONS_00044512-exon-sc0005695-1510915933:774..875 | TCONS_00044512-exon-sc0005695-1510915933:774..875 | Clytia hemisphaerica | exon |
| TCONS_00044512-exon-sc0005695-1510915933:314..499 | TCONS_00044512-exon-sc0005695-1510915933:314..499 | Clytia hemisphaerica | exon |
| TCONS_00044512-exon-sc0005695-1491911889:1201..1266 | TCONS_00044512-exon-sc0005695-1491911889:1201..1266 | Clytia hemisphaerica | exon |
| TCONS_00044512-exon-sc0005695-1491911889:774..875 | TCONS_00044512-exon-sc0005695-1491911889:774..875 | Clytia hemisphaerica | exon |
| TCONS_00044512-exon-sc0005695-1491911889:314..499 | TCONS_00044512-exon-sc0005695-1491911889:314..499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005695 | supercontig | sc0005695:314..1266 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007084 | BRICHOS_dom |
Blast
The following BLAST results are available for this feature:
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