TCONS_00044475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044475
Unique NameTCONS_00044475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1182

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044475 ID=TCONS_00044475|Name=TCONS_00044475|organism=Clytia hemisphaerica|type=transcript|length=1182bp
TTGACATTGAATTTGAAACTCCATCTGCAAAACGCCCAGCTATGTACTTT
TTCATACCCTTAACACAATGTTTCTTATTATAGTTTTCTACACAGAAATT
ATAATAGATGGTAGCAGAAATATAGGGGAAGATGGTGTTAATGAACTCAG
GCaaactcaaaaaagtttctGAATTCAATGATGATGGAAATTCTCTTGAA
GCAAGGTTAATGAGAGTTTCAATAATTGATGGAGTTGACTCCAAGTTTGG
TTTTGATCGATATAAGGAAGCTATTGATAAAGTTGGATGGCTGATTAATA
TGAAACCGACCGAAATTCAAGATGAGGAGAAAAAATTGATTAGTGCTGTC
GATTATTATTTTGTCCAAGATGATGGCAACAGGTTTAAGGCTACAATACC
ATTCAAACCATATTTCTATATTGCAGCAAGAAagGGTAGCGAAAGAGAAC
TAGCAACATTTCTGAACAAGAAATTCAGTGGTATGATTGCTGGTATTGAA
ATGCTGGACAAGGAAGATTTAGATCTGCACAATCATTTGACTGGTCTAAA
GAAGACATATGTTAAACTTTCATTTCACAATGTTAAAGAACTACTAAAAA
TCAAAGGCCAATTGATGCCAATTGTTAGAAAGAACAAAGAACGAGAAAAA
GCCAATGCTACTGTTGCCCTAGTGACTGGGGAAAGTTCTAAAGCACCTTC
TTCGAGTAAATCAGATCAAATGGATAACATCTTGGATATACGTGAATATG
ATGTTCCTTATTATGTTCGAGTATCTATTGACACAAAAATTAGTGTGGGT
CATTGGTATACTGTCAAGGTCAGAGGTATCACCCATGTGGAGATTACAGA
AAGAACAGATCTGCTTCATCGTCCTGATCCTGTGGTCATGGCTTTCGATA
TCGAAACAACAAAACTGCCATTGAAGTTTCCTGACTCAGCTATTGACTCT
ATCATGATGATCTCATATATGATTGATGGCCAGGGTTACCTGATCACAAA
CAGAGAAATTATTTCAGAAGATATTGAAGATTTTGAGTATACACCAAGAC
CTGAATATGAGGGACCGATCATTGTCTTTAATGAACCCGATGAAgctGCA
TTACTTCGTAGATGGTTTGATCATATTGCAGAAACGAAACCGATGATTTA
TGTCACCTACAATGGTGACTTCTTCGATTGGT
Run BLAST on NCBI

protein sequence of TCONS_00044475-protein

>TCONS_00044475-protein ID=TCONS_00044475-protein|Name=TCONS_00044475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MVLMNSGKLKKVSEFNDDGNSLEARLMRVSIIDGVDSKFGFDRYKEAIDK
VGWLINMKPTEIQDEEKKLISAVDYYFVQDDGNRFKATIPFKPYFYIAAR
KGSERELATFLNKKFSGMIAGIEMLDKEDLDLHNHLTGLKKTYVKLSFHN
VKELLKIKGQLMPIVRKNKEREKANATVALVTGESSKAPSSSKSDQMDNI
LDIREYDVPYYVRVSIDTKISVGHWYTVKVRGITHVEITERTDLLHRPDP
VVMAFDIETTKLPLKFPDSAIDSIMMISYMIDGQGYLITNREIISEDIED
FEYTPRPEYEGPIIVFNEPDEAALLRRWFDHIAETKPMIYVTYNGDFFDW
Run BLAST on NCBI

transcript from alignment at sc0005634:270..3810+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044475 ID=TCONS_00044475|Name=TCONS_00044475|organism=Clytia hemisphaerica|type=transcript|length=3541bp|location=Sequence derived from alignment at sc0005634:270..3810+ (Clytia hemisphaerica)
TTGACATTGAATTTGAAACTCCATCTGCAAAACGCCCAGCTATGTACTTT
TTCATACCCTTAACACAATGTTTCTTATTATAGTTTTCTACACAGAAATT
ATAATAGATGGTAGCAGAAATATAGGGGAAGATGGTGTTAATGAACTCAG
GCaaactcaaaaaagtttctGAATTGTAAGTACTTTTCCAATTTTACTTG
AACAAAAGTTTGATCTGATTCTTGacataacaaaagaaaataaggATTAA
AAAGTCATAGGCTTTATAACTTTACATGTCTCTAAATACGTATGACTTTA
CATTCTACATCAAGTTTTTCAGTAAATATTTTTCCCATCTTTACAGCAAT
GATGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGA
TGGAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATA
AAGTTGGATGGCTGATTAATATGAAACCGGTGAGTTTGTAGAAATTACTG
ATACAAACAAACTGTTTCGGGTCAAAATCTGTCAAATTACCTTTAATATA
CCTTAGTAGTATTAACCGCTGGTCTAAGACACCTGTATTATTACTCTTAT
AAAGACTTCATTAAACACCTTTTATTAACATTTAACATTGTACTGTATAA
TAGCCTTTTAAGATTAATATGATATGATTTGACGCAGTTTGACGTGCCAA
GAACGTGATCTGGAATCAtctaattttttgttgttttatagACCGAAATT
CAAGATGAGGAGAAAAAATTGATTAGTGCTGTCGATTATTATTTTGTCCA
AGATGATGGCAACAGGTTTAAGGTAAGAGAAgagaaaattctattgttta
aataaTTATTTAGATAATTACCTCTTGATTGTTTTTCACATCACTGAGTG
TAACATcgtttctttttttactttatagGCTACAATACCATTCAAACCAT
ATTTCTATATTGCAGCAAGAAaggtaatattttgaaatttgggaACTTTG
AAATCAGTATCACATATTGTTAACCGGTCAATGTCTCAAAGCGGGCTACA
CGTTTTTTGaggcaatgcaattggttctttttgcatgacgacgggcctac
actgcccagagttgcccgtcgttaggaaaattcattgtgacatcactttt
tgaaaggaaaatgaacaatgcgttgacatcttttctctcattttttattt
GTGACGTCAGATATTATAACAATTTTTGATCTCTTTTCGCTCGTATTTTT
CACTTTATTTCGCTATTTTTCCTGGTAAAAGAGCTAAAAATCAATCGAAG
CTGAAGGAAAGGGTTAACAAATACAATAATGACCGGTTTTTTCGGGCTGT
ACTGAAAATATTGCCCACGGTCGACGCAAAAACAACCTTGCAGGCTTGGT
CGTTACTTGACCTCGGGCGATATTTCTCAGTACAGCCCTCACTAACCAGT
CATTGGTGTATTAATACATTTGTTATCATCTAGATAGTAATTTGCCTTGT
TTATCATCGTCAATGCAACCAAATAACTGTATCTGTTAGCATGAAATGTT
TTAACATTTCAAATCAATGATATTTCTCATTTCAGGGTAGCGAAAGAGAA
CTAGCAACATTTCTGAACAAGAAATTCAGTGGTATGATTGCTGGTATTGA
AATGCTGGACAAGGAAGATTTAGATCTGGTATCTTTTGATAAATTTTCAA
TGTTTTATTTTGTAGTGAATATTTATTGTTTTATCTGTACGTATGGTACA
ACAGAGCTTGTGTAATTGGTGTATTGTTAATATTTCATCAATCATTTTTT
AGATCTAAGTTAATCCATTTTTTTTCTTCTTTTCAGCACAATCATTTGAC
TGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAATGTTAAAGAAC
TACTAAAAATCAAAGGGTAATTTTCATTGAGAAGAAATTATGATTCACTG
AGATTATAATGACATTTGATTCTCTAATTGCTATTCTGATGATTTCAATT
TACAATGATTACTGTAATCTAAAATAGTGAAGTGTTCAGTCACAACTGAG
ATGAAAACATGGCGAAAACATACTGTTTTGATTACATTTGACAATTTTCC
TCTTTTTCAAACTAGCCAATTGATGCCAATTGTTAGAAAGAACAAAGAAC
GAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGGAAAGTTCTAAA
GCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATCTTGGATATACG
TGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGACACAAAAATTA
GTGTGGTATGTATAAAAGCTTGATGACAACCCTCACAATAAGGGTCAAAA
TATTACATTAAAAATTGTATAAAGAACAACAATACAAATGTATAAATCAC
TTTCTTATTGCTTCCTTATAAAAATGAATGTTGGAACATTGATAAAAGTA
AGCTGTTATTACATAGATGCTTACTTTGCATTACTTACCCAAAACCACAT
CCCACTTTGTATTGTCAGTTATTAATATGGCTTACGAAAATCATGAAAGG
CAATAAATGGAGATCGGTAATTTTCATTTGATGAAATAAACCTTCATAAA
AATATCAAATTTTTTTTTAAAGGGTCATTGGTATACTGTCAAGGTCAGAG
GTATCACCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCT
GATCCTGTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAA
GTTTCCTGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTG
ATGGCCAGGTTAGAATACTTTTTTTTAATTTTCAATAATACCTTTACGCA
CTTACGCACTTATGTTGTTATTTTATAACAAAAACTATTTATACCATCAT
AGTATGACTACTTGCTAGATTTTACAAGGCAGAAAGAAAGTAGTATAAGC
AGCTTGTCTCTTAAATTGTTTCTTCTACAGCTCTTTTTATTTCAAATTTT
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAGTATGCTTTAAATTGAATAGAAGATTATTATAATGTC
TTCTCTGTACCATTACCAACTTGATACCCTTTCCAATTTCTGCCATTTGT
AATCTAAATCATCAAGATACATTGTGCGCTTTCTAGAGTACATTTCTCTG
TTGTTTAGTTCCTTTTTGCCAGAAAGGATTCTCTTTGTAGTACTAAATCG
ATcatatttctttttaggctGCATTACTTCGTAGNTAATCTAAATCATCA
AGATACATTGTGCGCTTTCTAGAGTACATTTCTCTGTTGTTTAGTTCCTT
TTTGCCAGAAAGGATTCTCTTTGTAGTACTAAATCGATcatatttctttt
taggctGCATTACTTCGTAGATGGTTTGATCATATTGCAGAAACGAAACC
GATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGGT

Coding sequence (CDS) from alignment at sc0005634:270..3810+

>TCONS_00044475 ID=TCONS_00044475|Name=TCONS_00044475|organism=Clytia hemisphaerica|type=CDS|length=10500bp|location=Sequence derived from alignment at sc0005634:270..3810+ (Clytia hemisphaerica)
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
ATGGTGTTAATGAACTCAGGCaaactcaaaaaagtttctGAATTCAATGA
TGATGGAAATTCTCTTGAAGCAAGGTTAATGAGAGTTTCAATAATTGATG
GAGTTGACTCCAAGTTTGGTTTTGATCGATATAAGGAAGCTATTGATAAA
GTTGGATGGCTGATTAATATGAAACCGACCGAAATTCAAGATGAGGAGAA
AAAATTGATTAGTGCTGTCGATTATTATTTTGTCCAAGATGATGGCAACA
GGTTTAAGGCTACAATACCATTCAAACCATATTTCTATATTGCAGCAAGA
AagGGTAGCGAAAGAGAACTAGCAACATTTCTGAACAAGAAATTCAGTGG
TATGATTGCTGGTATTGAAATGCTGGACAAGGAAGATTTAGATCTGCACA
ATCATTTGACTGGTCTAAAGAAGACATATGTTAAACTTTCATTTCACAAT
GTTAAAGAACTACTAAAAATCAAAGGCCAATTGATGCCAATTGTTAGAAA
GAACAAAGAACGAGAAAAAGCCAATGCTACTGTTGCCCTAGTGACTGGGG
AAAGTTCTAAAGCACCTTCTTCGAGTAAATCAGATCAAATGGATAACATC
TTGGATATACGTGAATATGATGTTCCTTATTATGTTCGAGTATCTATTGA
CACAAAAATTAGTGTGGGTCATTGGTATACTGTCAAGGTCAGAGGTATCA
CCCATGTGGAGATTACAGAAAGAACAGATCTGCTTCATCGTCCTGATCCT
GTGGTCATGGCTTTCGATATCGAAACAACAAAACTGCCATTGAAGTTTCC
TGACTCAGCTATTGACTCTATCATGATGATCTCATATATGATTGATGGCC
AGGGTTACCTGATCACAAACAGAGAAATTATTTCAGAAGATATTGAAGAT
TTTGAGTATACACCAAGACCTGAATATGAGGGACCGATCATTGTCTTTAA
TGAACCCGATGAAgctGCATTACTTCGTAGATGGTTTGATCATATTGCAG
AAACGAAACCGATGATTTATGTCACCTACAATGGTGACTTCTTCGATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028106XLOC_028106Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044475-proteinTCONS_00044475-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044475-exon-sc0005634-1491911889:270..444TCONS_00044475-exon-sc0005634-1491911889:270..444Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:270..444TCONS_00044475-exon-sc0005634-1510915933:270..444Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:270..444TCONS_00044475-exon-sc0005634-1575043694:270..444Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:616..748TCONS_00044475-exon-sc0005634-1491911889:616..748Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:616..748TCONS_00044475-exon-sc0005634-1510915933:616..748Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:616..748TCONS_00044475-exon-sc0005634-1575043694:616..748Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:1011..1091TCONS_00044475-exon-sc0005634-1491911889:1011..1091Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:1011..1091TCONS_00044475-exon-sc0005634-1510915933:1011..1091Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:1011..1091TCONS_00044475-exon-sc0005634-1575043694:1011..1091Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:1198..1242TCONS_00044475-exon-sc0005634-1491911889:1198..1242Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:1198..1242TCONS_00044475-exon-sc0005634-1510915933:1198..1242Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:1198..1242TCONS_00044475-exon-sc0005634-1575043694:1198..1242Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:1855..1947TCONS_00044475-exon-sc0005634-1491911889:1855..1947Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:1855..1947TCONS_00044475-exon-sc0005634-1510915933:1855..1947Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:1855..1947TCONS_00044475-exon-sc0005634-1575043694:1855..1947Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:2106..2185TCONS_00044475-exon-sc0005634-1491911889:2106..2185Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:2106..2185TCONS_00044475-exon-sc0005634-1510915933:2106..2185Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:2106..2185TCONS_00044475-exon-sc0005634-1575043694:2106..2185Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:2385..2574TCONS_00044475-exon-sc0005634-1491911889:2385..2574Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:2385..2574TCONS_00044475-exon-sc0005634-1510915933:2385..2574Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:2385..2574TCONS_00044475-exon-sc0005634-1575043694:2385..2574Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:2892..3077TCONS_00044475-exon-sc0005634-1491911889:2892..3077Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:2892..3077TCONS_00044475-exon-sc0005634-1510915933:2892..3077Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:2892..3077TCONS_00044475-exon-sc0005634-1575043694:2892..3077Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:3272..3382TCONS_00044475-exon-sc0005634-1491911889:3272..3382Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:3272..3382TCONS_00044475-exon-sc0005634-1510915933:3272..3382Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:3272..3382TCONS_00044475-exon-sc0005634-1575043694:3272..3382Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1491911889:3723..3810TCONS_00044475-exon-sc0005634-1491911889:3723..3810Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1510915933:3723..3810TCONS_00044475-exon-sc0005634-1510915933:3723..3810Clytia hemisphaericaexon
TCONS_00044475-exon-sc0005634-1575043694:3723..3810TCONS_00044475-exon-sc0005634-1575043694:3723..3810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005634supercontigsc0005634:270..3810 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.0622	3.42354	7.4504	6.74414	3.78015	3.17772	3.81513	4.8712	2.16848	3.97136	3.34489	2.22859	2.30219	1.84825	2.48517	4.35506	2.9938	4.3046	0.632075	1.09079	1.93714	2.30271	1.58163	3.11277	5.51638	6.77479	1.03435	1.05952	2.30715	1.52229
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR006133DNA-dir_DNA_pol_B_exonuc
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:00084083'-5' exonuclease activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00044475 vs. Swiss-Prot (Human)
Match: DPOE1 (DNA polymerase epsilon catalytic subunit A OS=Homo sapiens GN=POLE PE=1 SV=5)

HSP 1 Score: 419.468 bits (1077), Expect = 1.117e-131
Identity = 217/348 (62.36%), Postives = 271/348 (77.87%), Query Frame = 3 
Query:  180 DDG--NSLEA--RLMRVSIIDGVDSKFGFDRYKEAIDKVGWLINMKPTEIQDEEKKLISAVDYYFVQDDGNRFKATIPFKPYFYIAARKGSERELATFLNKKFSGMIAGIEMLDKEDLDLHNHLTGLKKTYVKLSFHNVKELLKIKGQLMPIVRKNKEREKAN-ATVALVTG--------EXXXXXXXXXXDQMDNILDIREYDVPYYVRVSIDTKISVGHWYTVKVRGITH-VEITERTDLLHRPDPVVMAFDIETTKLPLKFPXXXXXXXXXXXXXXXGQGYLITNREIISEDIEDFEYTPRPEYEGPIIVFNEPDEAALLRRWFDHIAETKPMIYVTYNGDFFDW 1181
            DDG  +S+ A  RL R    D +D +FGF+R KE  +K GWLINM PTEI DE+K+L SAVDYYF+QDDG+RFK  +P+KPYFYIA RKG ERE+++FL+KKF G IA +E + KEDLDL NHL GLK+ Y++LSFH V++L+K++ ++ P V+KN+E++ A+ A  AL++            +  S   +DQ+DNI+D+REYDVPY++R+SID KI V HWY V+ RG    VEIT R DL+ RPDPVV+AFDIETTKLPLKFPD+  D IMMISYMIDGQGYLITNREI+SEDIEDFE+TP+PEYEGP  VFNEPDEA L++RWF+H+ ETKP I VTYNGDFFDW
Sbjct:   22 DDGATSSVSALKRLERSQWTDKMDLRFGFERLKEPGEKTGWLINMHPTEILDEDKRLGSAVDYYFIQDDGSRFKVALPYKPYFYIATRKGCEREVSSFLSKKFQGKIAKVETVPKEDLDLPNHLVGLKRNYIRLSFHTVEDLVKVRKEISPAVKKNREQDHASDAYTALLSSVLQRGGVITDEEETSKKIADQLDNIVDMREYDVPYHIRLSIDLKIHVAHWYNVRYRGNAFPVEITRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEAHLIQRWFEHVQETKPTIMVTYNGDFFDW 369
The following BLAST results are available for this feature:
BLAST of TCONS_00044475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOE11.117e-13162.36DNA polymerase epsilon catalytic subunit A OS=Homo... [more]
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