TCONS_00044469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044469
Unique NameTCONS_00044469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044469 ID=TCONS_00044469|Name=TCONS_00044469|organism=Clytia hemisphaerica|type=transcript|length=310bp
CCCATTCTATCCATATAATTATTGATATGCTCGCCATTTTCAATAAATTC
TGCGTAGTCCTGAGGGTAATCATCCATTCTCTCAATAGCTTGTAGACGAA
TGAGTTCATGTTGGCTATCATCCCCAGATGTCATTCTAGAGACAGCCCTG
AAAAAACAGTTGCCATCTCCAAGTGTTTCTTCCGGTTGCATATCATACAC
CTTCAACCTTTCTTCCAATCGTACCATTGCCTCTCTGTATTGGATATCAT
CGTCATCTTCAGTGCAGTTACCAGCAGCATCATTATTGGAACTTGCACCA
GCTAAAGGAT
Run BLAST on NCBI

protein sequence of TCONS_00044469-protein

>TCONS_00044469-protein ID=TCONS_00044469-protein|Name=TCONS_00044469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
PLAGASSNNDAAGNCTEDDDDIQYREAMVRLEERLKVYDMQPEETLGDGN
CFFRAVSRMTSGDDSQHELIRLQAIERMDDYPQDYAEFIENGEHINNYMD
RM
Run BLAST on NCBI

transcript from alignment at sc0005628:108..417

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044469 ID=TCONS_00044469|Name=TCONS_00044469|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at sc0005628:108..417 (Clytia hemisphaerica)
ATCCTTTAGCTGGTGCAAGTTCCAATAATGATGCTGCTGGTAACTGCACT
GAAGATGACGATGATATCCAATACAGAGAGGCAATGGTACGATTGGAAGA
AAGGTTGAAGGTGTATGATATGCAACCGGAAGAAACACTTGGAGATGGCA
ACTGTTTTTTCAGGGCTGTCTCTAGAATGACATCTGGGGATGATAGCCAA
CATGAACTCATTCGTCTACAAGCTATTGAGAGAATGGATGATTACCCTCA
GGACTACGCAGAATTTATTGAAAATGGCGAGCATATCAATAATTATATGG
ATAGAATGGG

Coding sequence (CDS) from alignment at sc0005628:108..417

>TCONS_00044469 ID=TCONS_00044469|Name=TCONS_00044469|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0005628:108..417 (Clytia hemisphaerica)
CCTTTAGCTGGTGCAAGTTCCAATAATGATGCTGCTGGTAACTGCACTGA
AGATGACGATGATATCCAATACAGAGAGGCAATGGTACGATTGGAAGAAA
GGTTGAAGGTGTATGATATGCAACCGGAAGAAACACTTGGAGATGGCAAC
TGTTTTTTCAGGGCTGTCTCTAGAATGACATCTGGGGATGATAGCCAACA
TGAACTCATTCGTCTACAAGCTATTGAGAGAATGGATGATTACCCTCAGG
ACTACGCAGAATTTATTGAAAATGGCGAGCATATCAATAATTATATGGAT
AGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028100XLOC_028100Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044469-proteinTCONS_00044469-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044469-exon-sc0005628-1491911889:108..417TCONS_00044469-exon-sc0005628-1491911889:108..417Clytia hemisphaericaexon
TCONS_00044469-exon-sc0005628-1510915933:108..417TCONS_00044469-exon-sc0005628-1510915933:108..417Clytia hemisphaericaexon
TCONS_00044469-exon-sc0005628-1575043694:108..417TCONS_00044469-exon-sc0005628-1575043694:108..417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005628supercontigsc0005628:108..417 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351113	0	0	0	0	0.374162	0.451411	0	0.295876	2.56543	0	0	0	0	0.199373	0.213958	0.527158	0.54032	0	0	0	0.496753	0.402579	0	0.376974	1.00932	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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