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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044445 ID=TCONS_00044445|Name=TCONS_00044445|organism=Clytia hemisphaerica|type=transcript|length=1045bp
CAAGTGTTCCGTCacttgcaaaattaaatttcagttcTTTGCCATGTGTT
CTATTTGGGCGTGTTTTTTGAAACAGTTTGTTAGGAACAGTCTTTCGCTT
GTAAAATGTGCACCATATTGCAAAAATGCCTTCAAGAGATGGTAACTCTA
GGTGTCTCAGTCTGTCTTCAAACAATAGATTGGAAAACCAACTAGTTGCC
TCCCTCTTTACGCTTTCGATCAAATGGAGCATCGTAGCTTTGGCTGCCCC
ACTGATTGAGCAAACTCTGAGTAAAGTCGTACGAATGAAGTGTACAGTGA
ACAAAATAAGTTTGGACTTGAATTTTCAAAGCCCCTTTTGATCAAAACAT
AGAGTTTGCTTTGTTTACCTGTTTTGAGACCTAGGTCCTTTTCGATGAAA
ATGTGCTCAAGTTGATTTCCATTCAACTAGTAGGGATGATCATGTTTGAt
gttatcaaattttcaaatgaatatCAAATTTTATGTACTTGGATCGATTG
GTTCAAATAATACAGTGTGAATATTTGACCTAATATTTCCAGTGGGGTTG
AGAATCCATTTTTTTGGATTCGGATACACACATGCTGTCATCTTAATCTT
TAAAACCTACCTTAAAGGAACTGATGTTcgcaaaaaatttgttttgatat
taccattttttgtttctttttagaaAAGCAATAAAGTAAAACGATGGATG
AATTAAATGTGACAACTCTCACTACAAACAGTTCTTTTCAGAACTACAAA
CCTCATTCAAATAAATACCTTGATGAGAAGATATTGAATGAAAACTTTGC
CAAGTTCGAGTGTTGCAGAAAGAACTGTAAAGAAACAACCAACCCGTACG
ATACGAAAGCCCTAAGAAATGTTTTCCATAATAAAACACAAGCCGAGCAA
CGTCAGTTCATGTTGGACTACATCAACCAATTTGTGCCTGACAAAGTGAT
ATATCTAATCAGACAAACACCTGTATGTAAAAAGTTCTGGTGTTTTACCC
ATGGCACTTCGGTGGCAAGGTAACTATTGTTGTTTGTTTCCTTTA Run BLAST on NCBI protein sequence of TCONS_00044445-protein >TCONS_00044445-protein ID=TCONS_00044445-protein|Name=TCONS_00044445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MDELNVTTLTTNSSFQNYKPHSNKYLDEKILNENFAKFECCRKNCKETTN
PYDTKALRNVFHNKTQAEQRQFMLDYINQFVPDKVIYLIRQTPVCKKFWC
FTHGTSVAR Run BLAST on NCBI transcript from alignment at sc0005589:5..1049 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044445 ID=TCONS_00044445|Name=TCONS_00044445|organism=Clytia hemisphaerica|type=transcript|length=1045bp|location=Sequence derived from alignment at sc0005589:5..1049 (Clytia hemisphaerica)
TAAAGGAAACAAACAACAATAGTTACCTTGCCACCGAAGTGCCATGGGTA
AAACACCAGAACTTTTTACATACAGGTGTTTGTCTGATTAGATATATCAC
TTTGTCAGGCACAAATTGGTTGATGTAGTCCAACATGAACTGACGTTGCT
CGGCTTGTGTTTTATTATGGAAAACATTTCTTAGGGCTTTCGTATCGTAC
GGGTTGGTTGTTTCTTTACAGTTCTTTCTGCAACACTCGAACTTGGCAAA
GTTTTCATTCAATATCTTCTCATCAAGGTATTTATTTGAATGAGGTTTGT
AGTTCTGAAAAGAACTGTTTGTAGTGAGAGTTGTCACATTTAATTCATCC
ATCGTTTTACTTTATTGCTTttctaaaaagaaacaaaaaatggtaatatc
aaaacaaattttttgcgAACATCAGTTCCTTTAAGGTAGGTTTTAAAGAT
TAAGATGACAGCATGTGTGTATCCGAATCCAAAAAAATGGATTCTCAACC
CCACTGGAAATATTAGGTCAAATATTCACACTGTATTATTTGAACCAATC
GATCCAAGTACATAAAATTTGatattcatttgaaaatttgataacaTCAA
ACATGATCATCCCTACTAGTTGAATGGAAATCAACTTGAGCACATTTTCA
TCGAAAAGGACCTAGGTCTCAAAACAGGTAAACAAAGCAAACTCTATGTT
TTGATCAAAAGGGGCTTTGAAAATTCAAGTCCAAACTTATTTTGTTCACT
GTACACTTCATTCGTACGACTTTACTCAGAGTTTGCTCAATCAGTGGGGC
AGCCAAAGCTACGATGCTCCATTTGATCGAAAGCGTAAAGAGGGAGGCAA
CTAGTTGGTTTTCCAATCTATTGTTTGAAGACAGACTGAGACACCTAGAG
TTACCATCTCTTGAAGGCATTTTTGCAATATGGTGCACATTTTACAAGCG
AAAGACTGTTCCTAACAAACTGTTTCAAAAAACACGCCCAAATAGAACAC
ATGGCAAAgaactgaaatttaattttgcaagtGACGGAACACTTG Coding sequence (CDS) from alignment at sc0005589:5..1049 >TCONS_00044445 ID=TCONS_00044445|Name=TCONS_00044445|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0005589:5..1049 (Clytia hemisphaerica)
TTACCTTGCCACCGAAGTGCCATGGGTAAAACACCAGAACTTTTTACATA
CAGGTGTTTGTCTGATTAGATATATCACTTTGTCAGGCACAAATTGGTTG
ATGTAGTCCAACATGAACTGACGTTGCTCGGCTTGTGTTTTATTATGGAA
AACATTTCTTAGGGCTTTCGTATCGTACGGGTTGGTTGTTTCTTTACAGT
TCTTTCTGCAACACTCGAACTTGGCAAAGTTTTCATTCAATATCTTCTCA
TCAAGGTATTTATTTGAATGAGGTTTGTAGTTCTGAAAAGAACTGTTTGT
AGTGAGAGTTGTCACATTTAATTCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044445-exon-sc0005589-1491911889:5..1049 | TCONS_00044445-exon-sc0005589-1491911889:5..1049 | Clytia hemisphaerica | exon |
| TCONS_00044445-exon-sc0005589-1510915933:5..1049 | TCONS_00044445-exon-sc0005589-1510915933:5..1049 | Clytia hemisphaerica | exon |
| TCONS_00044445-exon-sc0005589-1575043694:5..1049 | TCONS_00044445-exon-sc0005589-1575043694:5..1049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005589 | supercontig | sc0005589:5..1049 . |
Blast
The following BLAST results are available for this feature:
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