TCONS_00044437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044437
Unique NameTCONS_00044437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044437 ID=TCONS_00044437|Name=TCONS_00044437|organism=Clytia hemisphaerica|type=transcript|length=605bp
TAGACGTACAAGTTTCtgaaatatttaaattcgtCCAAACGTTTTGTTGG
AGAACTTTAGAAGAATTTTCCATGATAAAGGAAGATGGATAAAGGTATTT
CTAGTAACGTGTTACATCCTTGAGTATAAACAATTATGGCTGCTTCCAAC
CCCAAAGAATATGGGTTCGATgttaaatttgttgaaaaactgGATAGGGA
CAATATAAAGTGTGCCATATGTTTTATGGTCTTACGAGAACCCTTGCAAG
GGTCAACATGTGGTCATAGGTATTGCAAGAAATGCATTGAAGATTTTCAT
GAAAAGAACCCAAAGAAATGTCCGCAAGATTGGCAAGACAATGAGTGGTT
TAAAGACTTGGGAAAGGAAAGAGAGATTCTTGATTTAAAGATTCGATGTA
AAAATCATCGCGATGGATGCACCTGGCAGAACGAACTTCGAGATCAAGAG
GAGCATTTGAAGACATGTGATTTCGAAACTATTCAATGTAATCTACGATG
TGGAGAGCCCGTGCTACGGAAAAACcttcaaaatCACTTGGATAAAGACT
GCCCATTGATCTCAACGTGCGAGTACAGCGATTTTGGGTGTCTTTTTAAG
GTAAT
Run BLAST on NCBI

protein sequence of TCONS_00044437-protein

>TCONS_00044437-protein ID=TCONS_00044437-protein|Name=TCONS_00044437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MAASNPKEYGFDVKFVEKLDRDNIKCAICFMVLREPLQGSTCGHRYCKKC
IEDFHEKNPKKCPQDWQDNEWFKDLGKEREILDLKIRCKNHRDGCTWQNE
LRDQEEHLKTCDFETIQCNLRCGEPVLRKNLQNHLDKDCPLISTCEYSDF
GCLFKV
Run BLAST on NCBI

transcript from alignment at sc0005569:790..3126-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044437 ID=TCONS_00044437|Name=TCONS_00044437|organism=Clytia hemisphaerica|type=transcript|length=2337bp|location=Sequence derived from alignment at sc0005569:790..3126- (Clytia hemisphaerica)
TAGACGTACAAGTTTCTGAAATATTTAAATTCGTCCAAACGTTTTGTTGG
AGAACTTTAGAAGAATTTTCCATGATAAAGGAAGATGGATAAAGGTATTT
CTAGTAACGTGTTACATCCTTGAGTATAAACAATTATGGCTGCTTCCAAC
CCCAAAGAATATGGGTTCGATGTTAAATTTGTTGAAAAACTGGATAGGGA
CAATATAAAGTGTGCCATATGTTTTATGGTCTTACGAGAACCCTTGCAAG
GGTCAACATGTGGTCATAGGTATTGCAAGAAATGCATTGAAGATTTTCAT
GAAAAGAAGTAAGTTACTATTTTGATTCGAATATTTATACGTTCTACTTT
TCATATATTTATTTCTCCATAAAGCGATTTATTGCAGAAACTCCCTTATT
AGGGGGGGGGGGGGGTTCCGTGTAGTCACATGGTTTCCTTTAAGAAACTT
TTATCGCTGATTGCAAATTTGCATCTTTCTGGATGGCTATCGAACGCATC
CAGCGAGGATCCTGAGTTAAATCTTGATCTGTTTATTAAAGCTAAAGTGG
ATCTGTTTCCCTCTCCTAGAATCCTCAAAATCTTTATATGTTTTCCCGCC
CTTGTTTATGATGACTGTTTTCTCTTAGAAATTTGTTTCCCAATTTATTA
CATCATCTCCTAGAAATATTGATCTGATTTCCAATGATGACGTCATCAGC
TGAAGCAGGAAACAGATGATAGAAATTCTGATCTGTTTCCCAACTTTTCT
CCTGGAAAGGGGAAACAGGTATTTTAGGGAAACAGGCTATCATCCGCTGT
TTCTGAGCTATGAGCTAAATCATTAACCACGTACAGAAAATATACATTTT
GGAAAACAAAAACCATGTAGAGACTTTAAAAACAAAGAGTAGAGATGAAA
TACTTGAAAGGTTAGTAATAATAAATCGTCTTTTTACGATCGTTTTTAGC
CCAAAGAAATGTCCGCAAGATTGGCAAGACAATGAGTGGTTTAAAGACTT
GGGAAAGGAAAGAGAGATTCTTGATTTAAAGATTCGATGTAAAAATCATC
GCGATGGATGCACCTGGCAGAACGAACTTCGAGATCAAGAGGTTTGATTC
TTTCCGTAATGTGACATTCACAACTGTAGTTTAGCTTAAAAGACTTTCAA
GGGGGAGAGGAAGTGTGTTTTAAAACTACTGTTTTGAAAAAGAAAAGATT
AGGGTCTCGAAATTGCAGAAATGGTCAAACCTTCTAAAATTTCTCCCAAA
AAGCTTTTTTTCTCACTTTTAACAGCCTTACGACACATTCTCTCTCAAAT
CAAGCCCTACTGTGGGCCTATTGTACACTTTGGAAAGCCTAAAAACGTGC
CCTTAAAGGCTTCAGCTTTAGAGGAACTTACTCCCCCTCCGTAGTTGTAC
GTTATACACTGACTGGAAAAATAATTTATCTCCCGTTCGATTGAATACAT
GCTTTCTTTATAAGCATCAGGAGATTTTGACACAGACTGTTGTTCTTAAT
TTTTTGAAATTTCAGGCTTAATGTTCTTATTAGGATGTTCTTAATATGAT
TAGTTTCTTTTCTGTTAAAATCAATTAAAATCAATACTGTCTTAGTAATT
TCTGAATTCTGAGCCTCAGATTGTTCTTAATTTGTTCTTAGCTTTTGGCC
CATTTTCAGCCTCATGTTCTTATAAAATCGTTCTTATAAAAAAAACGTGC
ACTGTGATTTTACAATATTATGTTCTTTTATAGGAGCATTTGAAGACATG
TGATTTCGAAACTATTCAATGTAATCTACGATGTGGAGAGCCCGTGCTAC
GGAAAAACGTAAGAAAGAGAACCATTATCATGTCTTCAGAGACAGAATTC
ATCTTTTCTTGTATTATATTATATTAGCCAGTACCTTACCATTATTATTT
ATTAAGAACGCAGTAAAAACGCAGTTCTCGCCTAACCGGCTAGTATTATT
TGGCTCTAAGAGGCCAGATCTATTGATTAGTCAAGGCTACGAGGCTCCTT
AAAATATTAATATTTGTCCTTATGAATGAAATTTTCTACTTCACTGATTT
TAAATGCAACTTTTACTTCTGTGGGCCAATAATTTTCATTGACAAGAACT
GTTAGAGCTTTCGAAACTTATCTACTGATTCTACTGATTATTAGGTACAG
CCCTTAGTTGTGTGCGTTAATCAATTTCATTGACATTGGACCCAATAAAC
TGTGAAGAGAAGAACTTTAAAAGGATATAAATTTTGATTATTATATTTAA
ATTTTAGCTTCAAAATCACTTGGATAAAGACTGCCCATTGATCTCAACGT
GCGAGTACAGCGATTTTGGGTGTCTTTTTAAGGTAAT

Coding sequence (CDS) from alignment at sc0005569:790..3126-

>TCONS_00044437 ID=TCONS_00044437|Name=TCONS_00044437|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0005569:790..3126- (Clytia hemisphaerica)
CTTCAAAATCACTTGGATAAAGACTGCCCATTGATCTCAACGTGCGAGTA
CAGCGATTTTGGGTGTCTTTTTAAGGTAGAGCATTTGAAGACATGTGATT
TCGAAACTATTCAATGTAATCTACGATGTGGAGAGCCCGTGCTACGGAAA
AACCCCAAAGAAATGTCCGCAAGATTGGCAAGACAATGAGTGGTTTAAAG
ACTTGGGAAAGGAAAGAGAGATTCTTGATTTAAAGATTCGATGTAAAAAT
CATCGCGATGGATGCACCTGGCAGAACGAACTTCGAGATCAAGAGATGGC
TGCTTCCAACCCCAAAGAATATGGGTTCGATGTTAAATTTGTTGAAAAAC
TGGATAGGGACAATATAAAGTGTGCCATATGTTTTATGGTCTTACGAGAA
CCCTTGCAAGGGTCAACATGTGGTCATAGGTATTGCAAGAAATGCATTGA
AGATTTTCATGAAAAGAACTTCAAAATCACTTGGATAAAGACTGCCCATT
GATCTCAACGTGCGAGTACAGCGATTTTGGGTGTCTTTTTAAGGTAGAGC
ATTTGAAGACATGTGATTTCGAAACTATTCAATGTAATCTACGATGTGGA
GAGCCCGTGCTACGGAAAAACCCCAAAGAAATGTCCGCAAGATTGGCAAG
ACAATGAGTGGTTTAAAGACTTGGGAAAGGAAAGAGAGATTCTTGATTTA
AAGATTCGATGTAAAAATCATCGCGATGGATGCACCTGGCAGAACGAACT
TCGAGATCAAGAGATGGCTGCTTCCAACCCCAAAGAATATGGGTTCGATG
TTAAATTTGTTGAAAAACTGGATAGGGACAATATAAAGTGTGCCATATGT
TTTATGGTCTTACGAGAACCCTTGCAAGGGTCAACATGTGGTCATAGGTA
TTGCAAGAAATGCATTGAAGATTTTCATGAAAAGAACTTCAAAATCACTT
GGATAAAGACTGCCCATTGATCTCAACGTGCGAGTACAGCGATTTTGGGT
GTCTTTTTAAGGTAGAGCATTTGAAGACATGTGATTTCGAAACTATTCAA
TGTAATCTACGATGTGGAGAGCCCGTGCTACGGAAAAACCCCAAAGAAAT
GTCCGCAAGATTGGCAAGACAATGAGTGGTTTAAAGACTTGGGAAAGGAA
AGAGAGATTCTTGATTTAAAGATTCGATGTAAAAATCATCGCGATGGATG
CACCTGGCAGAACGAACTTCGAGATCAAGAGATGGCTGCTTCCAACCCCA
AAGAATATGGGTTCGATGTTAAATTTGTTGAAAAACTGGATAGGGACAAT
ATAAAGTGTGCCATATGTTTTATGGTCTTACGAGAACCCTTGCAAGGGTC
AACATGTGGTCATAGGTATTGCAAGAAATGCATTGAAGATTTTCATGAAA
AGAACTTCAAAATCACTTGGATAAAGACTGCCCATTGATCTCAACGTGCG
AGTACAGCGATTTTGGGTGTCTTTTTAAGGTAGAGCATTTGAAGACATGT
GATTTCGAAACTATTCAATGTAATCTACGATGTGGAGAGCCCGTGCTACG
GAAAAACCCCAAAGAAATGTCCGCAAGATTGGCAAGACAATGAGTGGTTT
AAAGACTTGGGAAAGGAAAGAGAGATTCTTGATTTAAAGATTCGATGTAA
AAATCATCGCGATGGATGCACCTGGCAGAACGAACTTCGAGATCAAGAGA
TGGCTGCTTCCAACCCCAAAGAATATGGGTTCGATGTTAAATTTGTTGAA
AAACTGGATAGGGACAATATAAAGTGTGCCATATGTTTTATGGTCTTACG
AGAACCCTTGCAAGGGTCAACATGTGGTCATAGGTATTGCAAGAAATGCA
TTGAAGATTTTCATGAAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028069XLOC_028069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044437-exon-sc0005569-1575043694:2819..3126TCONS_00044437-exon-sc0005569-1575043694:2819..3126Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1575043694:2036..2177TCONS_00044437-exon-sc0005569-1575043694:2036..2177Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1575043694:1319..1393TCONS_00044437-exon-sc0005569-1575043694:1319..1393Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1575043694:790..869TCONS_00044437-exon-sc0005569-1575043694:790..869Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1510915933:2819..3126TCONS_00044437-exon-sc0005569-1510915933:2819..3126Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1510915933:2036..2177TCONS_00044437-exon-sc0005569-1510915933:2036..2177Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1510915933:1319..1393TCONS_00044437-exon-sc0005569-1510915933:1319..1393Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1510915933:790..869TCONS_00044437-exon-sc0005569-1510915933:790..869Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1491911889:2819..3126TCONS_00044437-exon-sc0005569-1491911889:2819..3126Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1491911889:2036..2177TCONS_00044437-exon-sc0005569-1491911889:2036..2177Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1491911889:1319..1393TCONS_00044437-exon-sc0005569-1491911889:1319..1393Clytia hemisphaericaexon
TCONS_00044437-exon-sc0005569-1491911889:790..869TCONS_00044437-exon-sc0005569-1491911889:790..869Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044437-proteinTCONS_00044437-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005569supercontigsc0005569:790..3126 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03589	1.93922	1.01707	0.563735	1.49321	0.625703	7.14204	7.45667	3.89064	4.63392	4.02598	2.46956	12.3035	6.36648	16.4803	13.1947	6.22163	7.21083	11.6083	14.8462	4.52332	4.96947	4.14642	5.45266	2.97396	3.2909	9.98812	5.76206	12.3669	14.019
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00044437 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.996e-27
Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = 1 
Query:  163 GFDVKFVEKLDRDNIKCAICFMVLREPLQGSTCGHRYCKKCIEDFHEKNPKKCPQDWQDNEW---FKDLGKEREILDLKIRCKNHRDGCTWQNELRDQEEHLKTCDFETIQCNLRCGEPVLRKNLQNHLDKDCP 555
            GFD KF+EK  R  + C +C   +REP+Q STCGHR+C  C+++F  +   KCP+D    ++   + D   E ++L L IRC +  +GC W   LR  + HL TC F  I C  RC   + R++L  HL  DCP
Sbjct:    3 GFDYKFLEKPKR-RLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCP 135
The following BLAST results are available for this feature:
BLAST of TCONS_00044437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF44.996e-2741.04TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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