TCONS_00044424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044424
Unique NameTCONS_00044424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044424 ID=TCONS_00044424|Name=TCONS_00044424|organism=Clytia hemisphaerica|type=transcript|length=420bp
AGATGTTGAAAGCATTTCACCTGACTGCGGAAGCATCATGGGTGGAACCC
AACTCACCATCAGTAAAGGTTTTGGAAGTGCCGACGTCAgcaaagtgaaa
gtgaaagttgcAGGAGTGGAATGTCTAATTGATGAGGTCACTGATACGGT
TATCAAATGTACAACTGATCTTGAAAGGGATAGTTTTCCAGGTAAGAAGA
TTGAATcgtagatatcttatataaaacactagatagagatactctgtatt
tcccaagtaacggcaggtgaagcaaaataatgcgccatctttgctgaaag
aaGGTCACAGTTCTGTACTGTTAATGGAGAGCTTccattatttgatgacg
tcaataattatgtatatatttttaattagAAGTCCCTTGTGCATAGCGTC
CTTTCCTTTCAGTGTCCTTT
Run BLAST on NCBI

transcript from alignment at sc0005550:3452..3871

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044424 ID=TCONS_00044424|Name=TCONS_00044424|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at sc0005550:3452..3871 (Clytia hemisphaerica)
AAAGGACACTGAAAGGAAAGGACGCTATGCACAAGGGACTTctaattaaa
aatatatacataattattgacgtcatcaaataatggAAGCTCTCCATTAA
CAGTACAGAACTGTGACCttctttcagcaaagatggcgcattattttgct
tcacctgccgttacttgggaaatacagagtatctctatctagtgttttat
ataagatatctacgATTCAATCTTCTTACCTGGAAAACTATCCCTTTCAA
GATCAGTTGTACATTTGATAACCGTATCAGTGACCTCATCAATTAGACAT
TCCACTCCTgcaactttcactttcactttgcTGACGTCGGCACTTCCAAA
ACCTTTACTGATGGTGAGTTGGGTTCCACCCATGATGCTTCCGCAGTCAG
GTGAAATGCTTTCAACATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028056XLOC_028056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044424-exon-sc0005550-1491911889:3452..3871TCONS_00044424-exon-sc0005550-1491911889:3452..3871Clytia hemisphaericaexon
TCONS_00044424-exon-sc0005550-1510915933:3452..3871TCONS_00044424-exon-sc0005550-1510915933:3452..3871Clytia hemisphaericaexon
TCONS_00044424-exon-sc0005550-1575043694:3452..3871TCONS_00044424-exon-sc0005550-1575043694:3452..3871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005550supercontigsc0005550:3452..3871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34513	1.31171	1.52302	1.86255	0.339842	0.402475	0.819166	0.809509	0.283378	0.877524	0.851747	0.805445	1.51332	0.456663	0.218859	0.10246	0.285174	0.517497	0.536213	0.412603	0.325136	0.56925	1.15672	0.876357	0	0.564695	0.230555	0.492108	0.373247	0.760559
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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