TCONS_00044422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044422
Unique NameTCONS_00044422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044422 ID=TCONS_00044422|Name=TCONS_00044422|organism=Clytia hemisphaerica|type=transcript|length=297bp
ATTGTCAAGAATAACAGAATTAACTCCAAGCTaagtatattttattattt
taaaacttaaacttctattgtttttttgagattgaagacagttattaaaa
aataataagaaagatTTAAGGCAGAAAAAAGGTACTATACTGTTTGAAAT
TTGTTATGGCTTAGTTTTgatgcatttttttttcaaccccaGGACGGTGT
TGATATTATTTCATTGCTGTACATTATATGCTGCATTGTATAGTAAAGAG
AAAAGCAAGCTTGAATTACAGATTTTGAACATAATTTAGAATAACTN
Run BLAST on NCBI

transcript from alignment at sc0005546:3852..4148

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044422 ID=TCONS_00044422|Name=TCONS_00044422|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at sc0005546:3852..4148 (Clytia hemisphaerica)
NAGTTATTCTAAATTATGTTCAAAATCTGTAATTCAAGCTTGCTTTTCTC
TTTACTATACAATGCAGCATATAATGTACAGCAATGAAATAATATCAACA
CCGTCCtggggttgaaaaaaaaatgcatcAAAACTAAGCCATAACAAATT
TCAAACAGTATAGTACCTTTTTTCTGCCTTAAatctttcttattattttt
taataactgtcttcaatctcaaaaaaacaatagaagtttaagttttaaaa
taataaaatatacttAGCTTGGAGTTAATTCTGTTATTCTTGACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028054XLOC_028054Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044422-exon-sc0005546-1491911889:3852..4148TCONS_00044422-exon-sc0005546-1491911889:3852..4148Clytia hemisphaericaexon
TCONS_00044422-exon-sc0005546-1510915933:3852..4148TCONS_00044422-exon-sc0005546-1510915933:3852..4148Clytia hemisphaericaexon
TCONS_00044422-exon-sc0005546-1575043694:3852..4148TCONS_00044422-exon-sc0005546-1575043694:3852..4148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005546supercontigsc0005546:3852..4148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.99761	0.728233	1.76267	0.463838	3.398	1.23482	2.06928	0.658588	0	0	0	1.12088	0.850941	0.842563	1.19731	1.31752	3.9959	3.11808	0	0.375159	10.2524	8.14913	3.95547	3.03073	0	0	3.324	2.04751	0	1.62999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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