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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044415 ID=TCONS_00044415|Name=TCONS_00044415|organism=Clytia hemisphaerica|type=transcript|length=1918bp
ATANTCCTGTTTCAAACTATTGAGTTTGGATAGTTATCTTTTTTACGTTT
AGTGGATTACATGCATTCGATACCCTCGTTAATGTGATTGAATTTTCGGA
GAATATTTTGATAGAACCGCTCAAACTCAGCTTTCAAAGCAACTTTGTTC
GTGCGTGTTTGAGTTGATCAAGTCCAAATGAAAGCACCTTCTTCTCGTCT
GGTGTCAGGATGTATGACGAAAGATTGTGAACGGTGCGTTTTCGTTTCTA
TTCCTTTGCATCGCAAGTATGAGTTTTGTCGTTGGATTCTTTTATTATTA
TCAGAAGACGCTTTACTAAAAAAGTAAACATGAAAACTAGGGCATCCTTG
AGTTCATAACGTAGCCTTCCGAACGAATATGTTGAATCAAATCACTTATA
GTTAACCTTAAACTTGATCGAGAAAATGTTATTTGTGCTTTCAGCAATCC
GTGTAGCTTCTTGCATTGGTAGAAACTTGTTATATCCGCTTTTAGTGGAT
TCCGAATTACACCACGATCTTCTGGACACGTATATATATTCACCATTTGC
ACTACAGTAAAAAGATAAAagatttattcaatttttatccTTTATTTCAA
GCTTTTAACAGTTTTAGAACAAAGCCATTCGATGTATGCCAACTAAAGTG
AAATAATCTAAGTGGTAACAAAAAATGATTCCAGTTGGCACTTTGAAGAA
CGGTCTGTAAAATGCACATTAACAAAGCCCTTCCGGAACTCCAGGAATTG
AAACTTTTGAGGTCAAAATTTTCCTTCTCAGTTATATCAAGAAAATACGT
CAACAAAACATCACATTTAAGtggttgaaaagaaaattagatTCTGTAGA
AAATGTGTGGACCAGTTGGTTCAGAAGTACGTGTTTAAAAGTTATTATAA
TCAATAAGCTGCAAGTAGGATGACGGACTAATAACGAAATCTTACTGTTT
TGTAGAAAATTTAGCTTTGAGCCAGAGGTAAATGATGCTGAATGGAAAca
gctttttgtttttaaacttaTCCCAAAGCTCATTGATAGGTATGTCTTTT
TTGGTTTACTCCCATGACAATTATCCTTATTTTGtgtattgatatttttg
ttgtttAGGATACTGCTAGTTTTGTAATAATTAGTGGTCACAAAAATTAG
AATCGATGTTGCTCTTGTTTAAGTGATCTAATTTGAATCGATTGGATTTG
GTttctatttctttgaattgtcAAATTGAGTTTTGTTGCCGGATTCTTCT
ATCTTGTTCTTGTTTgtcttatttcaaattgtttatCTCAGCTAGTATTT
CTTGGATCTCTTGCTTTTGTAGGAAAATTTTGAACAAGACCATAAAGTCA
TGAGCAAAATCTCATTCCGGCCTAATAtccaaattttaacaaaattcaac
aaaatatcCGTTTGCTCCGTTTGCTGTCTGTTCGTAACATATTCCAAGGT
CGTATGATTTGTTCTGAtcaaagaaatttgaaattcaatttaatAGGTGT
AAAATTCTCTATATTCCCAAAAATTGTGAGTTAGACGTGTTTCCTTATCT
TACACCAAACTCCATTTCTTTTCACCACCAAGTTTACTGATGATCAGCCA
GACATTGCTTGGCATTTCTCCAATAATAACgattttttgaattcttttca
ttttgttcAAGGAAAGAGGCTTTTCCATCAAATTTTCTTAAATGAACATA
GGACCTGTGAACAAACCTTAACACAGAGTGTGCCCAGGCTGGAAAAAACC
CCAAAATGAAAGTTGCTGAGAAGGCCTGATTTGAGTTTTTTCTGAAAGTA
TATACCTTAAACTATAAGAAATGGCCATTGACAGAGTCTGGGAGTGATTT
TAGGGTCCTGGGACCCCCCTCTGAAGTCACCACTCAGagcaaaaatcact
tttttcaaccaatcttca Run BLAST on NCBI transcript from alignment at sc0005534:27..1944 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044415 ID=TCONS_00044415|Name=TCONS_00044415|organism=Clytia hemisphaerica|type=transcript|length=1918bp|location=Sequence derived from alignment at sc0005534:27..1944 (Clytia hemisphaerica)
tgaagattggttgaaaaaagtgatttttgctCTGAGTGGTGACTTCAGAG
GGGGGTCCCAGGACCCTAAAATCACTCCCAGACTCTGTCAATGGCCATTT
CTTATAGTTTAAGGTATATACTTTCAGAAAAAACTCAAATCAGGCCTTCT
CAGCAACTTTCATTTTGGGGTTTTTTCCAGCCTGGGCACACTCTGTGTTA
AGGTTTGTTCACAGGTCCTATGTTCATTTAAGAAAATTTGATGGAAAAGC
CTCTTTCCTTgaacaaaatgaaaagaattcaaaaaatcGTTATTATTGGA
GAAATGCCAAGCAATGTCTGGCTGATCATCAGTAAACTTGGTGGTGAAAA
GAAATGGAGTTTGGTGTAAGATAAGGAAACACGTCTAACTCACAATTTTT
GGGAATATAGAGAATTTTACACCTattaaattgaatttcaaatttctttg
aTCAGAACAAATCATACGACCTTGGAATATGTTACGAACAGACAGCAAAC
GGAGCAAACGgatattttgttgaattttgttaaaatttggaTATTAGGCC
GGAATGAGATTTTGCTCATGACTTTATGGTCTTGTTCAAAATTTTCCTAC
AAAAGCAAGAGATCCAAGAAATACTAGCTGAGataaacaatttgaaataa
gacAAACAAGAACAAGATAGAAGAATCCGGCAACAAAACTCAATTTgaca
attcaaagaaatagaaACCAAATCCAATCGATTCAAATTAGATCACTTAA
ACAAGAGCAACATCGATTCTAATTTTTGTGACCACTAATTATTACAAAAC
TAGCAGTATCCTaaacaacaaaaatatcaatacaCAAAATAAGGATAATT
GTCATGGGAGTAAACCAAAAAAGACATACCTATCAATGAGCTTTGGGAta
agtttaaaaacaaaaagctgTTTCCATTCAGCATCATTTACCTCTGGCTC
AAAGCTAAATTTTCTACAAAACAGTAAGATTTCGTTATTAGTCCGTCATC
CTACTTGCAGCTTATTGATTATAATAACTTTTAAACACGTACTTCTGAAC
CAACTGGTCCACACATTTTCTACAGAatctaattttcttttcaaccaCTT
AAATGTGATGTTTTGTTGACGTATTTTCTTGATATAACTGAGAAGGAAAA
TTTTGACCTCAAAAGTTTCAATTCCTGGAGTTCCGGAAGGGCTTTGTTAA
TGTGCATTTTACAGACCGTTCTTCAAAGTGCCAACTGGAATCATTTTTTG
TTACCACTTAGATTATTTCACTTTAGTTGGCATACATCGAATGGCTTTGT
TCTAAAACTGTTAAAAGCTTGAAATAAAggataaaaattgaataaatctT
TTATCTTTTTACTGTAGTGCAAATGGTGAATATATATACGTGTCCAGAAG
ATCGTGGTGTAATTCGGAATCCACTAAAAGCGGATATAACAAGTTTCTAC
CAATGCAAGAAGCTACACGGATTGCTGAAAGCACAAATAACATTTTCTCG
ATCAAGTTTAAGGTTAACTATAAGTGATTTGATTCAACATATTCGTTCGG
AAGGCTACGTTATGAACTCAAGGATGCCCTAGTTTTCATGTTTACTTTTT
TAGTAAAGCGTCTTCTGATAATAATAAAAGAATCCAACGACAAAACTCAT
ACTTGCGATGCAAAGGAATAGAAACGAAAACGCACCGTTCACAATCTTTC
GTCATACATCCTGACACCAGACGAGAAGAAGGTGCTTTCATTTGGACTTG
ATCAACTCAAACACGCACGAACAAAGTTGCTTTGAAAGCTGAGTTTGAGC
GGTTCTATCAAAATATTCTCCGAAAATTCAATCACATTAACGAGGGTATC
GAATGCATGTAATCCACTAAACGTAAAAAAGATAACTATCCAAACTCAAT
AGTTTGAAACAGGANTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044415-exon-sc0005534-1491911889:27..1944 | TCONS_00044415-exon-sc0005534-1491911889:27..1944 | Clytia hemisphaerica | exon |
| TCONS_00044415-exon-sc0005534-1510915933:27..1944 | TCONS_00044415-exon-sc0005534-1510915933:27..1944 | Clytia hemisphaerica | exon |
| TCONS_00044415-exon-sc0005534-1575043694:27..1944 | TCONS_00044415-exon-sc0005534-1575043694:27..1944 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005534 | supercontig | sc0005534:27..1944 . |
Blast
The following BLAST results are available for this feature:
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