TCONS_00044349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044349
Unique NameTCONS_00044349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044349 ID=TCONS_00044349|Name=TCONS_00044349|organism=Clytia hemisphaerica|type=transcript|length=477bp
NNTAGGTCTTGTTCCAactgaactgaaaaaatgcacCATAACACCAATTC
ACAAAGGAGGAAGCAGATCTCTGGCTGCCAACTACAGACCTGTTGCACTC
ACCTTGCATGTGAtaaaaattttcgagaaaatattgagaaatcaTATTGT
AAATCACATGAACAACAATGAtcttttcaatccaaaccaacaTGGTTTCA
GAAGTGGGAGATCCTGCCTTAGTCAGCTTCTCGAGCAACACGACCTCATT
CTTGACATATTAAATGAGGGTTTGAATGCAGATGTTGTTTACCTTGATTT
CTCAAAGGCTTTCGACAAAGTCGATCATGCAGTTGTACTTGGGAAATTAA
AGCAATTGGGTATATCCGGTCCAATCCACAGATGGATTGAATCATTCCTT
ACtgaaagatatcaaacagtAATAGTAAATGGTGTCAAGTCCAAAGCCCA
GAAAGTAATTTCAGGAGTCCCTCAAGG
Run BLAST on NCBI

protein sequence of TCONS_00044349-protein

>TCONS_00044349-protein ID=TCONS_00044349-protein|Name=TCONS_00044349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
XGLVPTELKKCTITPIHKGGSRSLAANYRPVALTLHVIKIFEKILRNHIV
NHMNNNDLFNPNQHGFRSGRSCLSQLLEQHDLILDILNEGLNADVVYLDF
SKAFDKVDHAVVLGKLKQLGISGPIHRWIESFLTERYQTVIVNGVKSKAQ
KVISGVPQ
Run BLAST on NCBI

transcript from alignment at sc0005428:2125..2601

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044349 ID=TCONS_00044349|Name=TCONS_00044349|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0005428:2125..2601 (Clytia hemisphaerica)
CCTTGAGGGACTCCTGAAATTACTTTCTGGGCTTTGGACTTGACACCATT
TACTATTactgtttgatatctttcaGTAAGGAATGATTCAATCCATCTGT
GGATTGGACCGGATATACCCAATTGCTTTAATTTCCCAAGTACAACTGCA
TGATCGACTTTGTCGAAAGCCTTTGAGAAATCAAGGTAAACAACATCTGC
ATTCAAACCCTCATTTAATATGTCAAGAATGAGGTCGTGTTGCTCGAGAA
GCTGACTAAGGCAGGATCTCCCACTTCTGAAACCAtgttggtttggattg
aaaagaTCATTGTTGTTCATGTGATTTACAATAtgatttctcaatatttt
ctcgaaaatttttaTCACATGCAAGGTGAGTGCAACAGGTCTGTAGTTGG
CAGCCAGAGATCTGCTTCCTCCTTTGTGAATTGGTGTTATGgtgcatttt
ttcagttcagtTGGAACAAGACCTANN

Coding sequence (CDS) from alignment at sc0005428:2125..2601

>TCONS_00044349 ID=TCONS_00044349|Name=TCONS_00044349|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0005428:2125..2601 (Clytia hemisphaerica)
TTGAGGGACTCCTGAAATTACTTTCTGGGCTTTGGACTTGACACCATTTA
CTATTactgtttgatatctttcaGTAAGGAATGATTCAATCCATCTGTGG
ATTGGACCGGATATACCCAATTGCTTTAATTTCCCAAGTACAACTGCATG
ATCGACTTTGTCGAAAGCCTTTGAGAAATCAAGGTAAACAACATCTGCAT
TCAAACCCTCATTTAATATGTCAAGAATGAGGTCGTGTTGCTCGAGAAGC
TGACTAAGGCAGGATCTCCCACTTCTGAAACCAtgttggtttggattgaa
aagaTCATTGTTGTTCATGTGATTTACAATAtgatttctcaatattttct
cgaaaatttttaTCACATGCAAGGTGAGTGCAACAGGTCTGTAGTTGGCA
GCCAGAGATCTGCTTCCTCCTTTGTGAATTGGTGTTATGgtgcatttttt
cagttcagtTGGAACAAGACCTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027982XLOC_027982Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044349-proteinTCONS_00044349-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044349-exon-sc0005428-1491911889:2125..2601TCONS_00044349-exon-sc0005428-1491911889:2125..2601Clytia hemisphaericaexon
TCONS_00044349-exon-sc0005428-1510915933:2125..2601TCONS_00044349-exon-sc0005428-1510915933:2125..2601Clytia hemisphaericaexon
TCONS_00044349-exon-sc0005428-1575043694:2125..2601TCONS_00044349-exon-sc0005428-1575043694:2125..2601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005428supercontigsc0005428:2125..2601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.34287	7.28179	7.50931	5.54345	11.3066	4.39561	6.84385	10.9652	6.23868	5.50357	6.19929	6.45551	3.39118	5.01115	1.1986	3.04558	3.14804	2.70758	1.70743	1.39176	4.26688	2.90322	1.12905	2.46812	3.75389	5.26988	4.03616	2.44578	2.87622	2.46983
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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