TCONS_00044337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044337
Unique NameTCONS_00044337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044337 ID=TCONS_00044337|Name=TCONS_00044337|organism=Clytia hemisphaerica|type=transcript|length=335bp
NNAGTGATAATAGTCCGATCATTAGCTTCTTGATTGACTTGTTATATACG
AATGGACCTTTAACGAACAACTTGGGATGCTTGAACTTTGAAGGGTTCAC
CCGTGCCACTCCTTTCTTCGTCTGGATGTTCTCATTCGGCAGGTTCACAA
CCGCTTTGATTCTCTTCAAGAAATCTAGACCAAGTACTAGGTTGAATTCC
ACGTTGCTTGACACATACACTTCATGGAGCCAACTTTGACTTCCTATGGC
CAATGGGAGGATAGTCGACCCTACTATCTCCACTGTGGATCCAGTTATTG
ATTTTACTGTACCAAAGTCTCTCGTGTCATCTGTC
Run BLAST on NCBI

protein sequence of TCONS_00044337-protein

>TCONS_00044337-protein ID=TCONS_00044337-protein|Name=TCONS_00044337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
TDDTRDFGTVKSITGSTVEIVGSTILPLAIGSQSWLHEVYVSSNVEFNLV
LGLDFLKRIKAVVNLPNENIQTKKGVARVNPSKFKHPKLFVKGPFVYNKS
IKKLMIGLLSX
Run BLAST on NCBI

transcript from alignment at sc0005401:3..337

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044337 ID=TCONS_00044337|Name=TCONS_00044337|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at sc0005401:3..337 (Clytia hemisphaerica)
GACAGATGACACGAGAGACTTTGGTACAGTAAAATCAATAACTGGATCCA
CAGTGGAGATAGTAGGGTCGACTATCCTCCCATTGGCCATAGGAAGTCAA
AGTTGGCTCCATGAAGTGTATGTGTCAAGCAACGTGGAATTCAACCTAGT
ACTTGGTCTAGATTTCTTGAAGAGAATCAAAGCGGTTGTGAACCTGCCGA
ATGAGAACATCCAGACGAAGAAAGGAGTGGCACGGGTGAACCCTTCAAAG
TTCAAGCATCCCAAGTTGTTCGTTAAAGGTCCATTCGTATATAACAAGTC
AATCAAGAAGCTAATGATCGGACTATTATCACTNN

Coding sequence (CDS) from alignment at sc0005401:3..337

>TCONS_00044337 ID=TCONS_00044337|Name=TCONS_00044337|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0005401:3..337 (Clytia hemisphaerica)
ACAGATGACACGAGAGACTTTGGTACAGTAAAATCAATAACTGGATCCAC
AGTGGAGATAGTAGGGTCGACTATCCTCCCATTGGCCATAGGAAGTCAAA
GTTGGCTCCATGAAGTGTATGTGTCAAGCAACGTGGAATTCAACCTAGTA
CTTGGTCTAGATTTCTTGAAGAGAATCAAAGCGGTTGTGAACCTGCCGAA
TGAGAACATCCAGACGAAGAAAGGAGTGGCACGGGTGAACCCTTCAAAGT
TCAAGCATCCCAAGTTGTTCGTTAAAGGTCCATTCGTATATAACAAGTCA
ATCAAGAAGCTAATGATCGGACTATTATCACTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027970XLOC_027970Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044337-proteinTCONS_00044337-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044337-exon-sc0005401-1491911889:3..337TCONS_00044337-exon-sc0005401-1491911889:3..337Clytia hemisphaericaexon
TCONS_00044337-exon-sc0005401-1510915933:3..337TCONS_00044337-exon-sc0005401-1510915933:3..337Clytia hemisphaericaexon
TCONS_00044337-exon-sc0005401-1575043694:3..337TCONS_00044337-exon-sc0005401-1575043694:3..337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005401supercontigsc0005401:3..337 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.84089	1.75151	1.13912	1.50025	2.32474	4.93479	0.949078	0.88169	2.46317	1.73361	8.28167	5.26008	3.31491	6.76301	1.40305	3.93795	0	0.313206	2.6438	2.37976	1.92482	1.31178	3.18424	4.58659	0.772163	2.39865	0	0.318404
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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