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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044331 ID=TCONS_00044331|Name=TCONS_00044331|organism=Clytia hemisphaerica|type=transcript|length=2684bp
CGTCATTCagatttcaaatttgaatttttgaaataatttaaaaGAGATTT
AATTCCCACAATAGGCATTAAGTAAGACAATAATAGAATAAAAGAGAAAT
AACCTTTGTGTATTGTTCGCTCtcgtttcaaaatttctcaggCTTCTTGC
CTCAGCACCTtctaattttagttttttttgttgaaaacattttgtttgAC
GCGAACAATAGATTAGCCTACATATTGTAGGCTAAATCATATTTCGGGAA
TTTGAGCTTTTACTTTTGAGATGTGGACGGGCAGACGCTGGCAATAGTGT
AATAGTGGGCCAGCTTTGTGGGCCCCTTATGTAGCGGTGGAGGCCCGGAC
GTtgggcccttaagggtaggtttttcatagttcagctagtgcactgtaag
ggtaggaaattataAAAtaggtcaattttggaggaaaaattccacatttt
cttggaaaattgcaaaaaatttcgcccttacgggcgagaaattttgaaaa
agtgcactgtaagggtatgatttttcatggaaattcactgcactgtaaga
gtccgattttagaagccaaattttgggccgaacgtatggtcgttttcaga
tcgagtgccccccccccggggttggAGGTCGGTCGAATTTTTGTTGGGAG
GTGTTTGTGTTACCAGCAAGTAAAACTTGTCAGGTCTTTTTATTATGTCA
GAACATTGTAGCATAGTTGGAATGTTTGCGTCACTAACTGAATCTGTCAA
CAATAAAGTAATTATGATAACTGTCAATATCAAATTCCCCTGATTACATT
ACATTCACACGTTTGGCCTCCAGGACGTGTTAATAATAtgccaaaaataa
attttccgttttttatctttagcgacactcaaatttgtttaattAGAATT
GTAATTATAAATAGAAATTGTAATGAGGTGTTTGAATGATTTATTGTgac
atatttttctattttgttgcCTTGATTTTTGTTTGTTGTGCTTTGCCATA
TGAGAAAAATCAGTGAATTTATAAATGTGTTATTTCCTCCTGAAACGGTC
TCAAAATTGAGACATCCTAGCGTAGGTGGTGTGTCTTGAAGTCTTTGGAA
AAAGTTGAATGGACGGCTGGTGTCCAATAAATTCTTCAAATAAAGTTTAA
CATTGTATTTCTTCTTTCATTTATAGATAACATTGCAAAAGTATCATGAA
TCTATAATAGAAGGAAATAAAACGCACTGCGAACAAACATTTCCAAAAAC
ATGGATTGGAATATCGCGTCAATAATTGCCACTGTAATATCACTGGCATC
ACTCTTATTCAGTTTAATCGCACTTCTCATCTGCGTTTCACAGCAGTTAT
GGAAAAAGAGAGACGCTATCTTGCTTTTTACAATCTTTTTGGTGGACATT
GCAATATCGTGTATCCTGGCAACAATGAACATTACCCAAttgaaaaatct
ggaaattaCCAATGTGGGTAGACGAGTTTTATCGAatatgtttttgttta
tgttcctCTTATCTTGGGGTGTGCAGTGTTTGATTGCAGTCAATCGCTAT
ATTGTGATCATATTTCCATTTGTCTACAAGAAGGTGTTAAGTCGAAAATG
TCTATGCATTTTGGTATCATCAATGTGTTCGTTATGTGTTGCTGGATGTA
TTTTATCAAGTGCTCTTTGGACGAGCTCTGATTCTACAAGCTATGATAGA
AAAACATTGTATCGCTCGATATGGGTACGCTTATCACCAATAGTGGTCAT
TATAGTCACTGTTTTACATGTTTTGTTTCTAATAATGATTTTCATTATGG
AGTGTTATCTTTGGAAAGTTGCCAGAGGACATCAAAACAGATATCGTTCA
ATAACTCATTCAGTCAATTCAACTCGTGATCCTGAGGCTAAGCGGCCAAG
TATCacacaaactttacaaaaacgCCTCAGTTTTTCGACACAACGAATGG
CGGTCCGTCGTACGcccttctttcttttgggcgctcATTTCTGCACGATT
ATTCCTTACTGTATTATAGCACTCGTCTACGCTTTGAAGAACAGACGATT
GTTTGAAAGTTCAACGTTCGATtatctttgtttatttctatTGGTTGTCA
ACGCATTTCGACCAATCATAAACGTTTTCCATCATATTTCATCCACTaag
atgaaaaagtttaaaCTTTCTTTACAAATGTTTTTAACGAAGAATTCTGA
GCTTCGTACGGATTATTACATTGAAAATCACAAAGAGGTGGAGAATATAT
TTAAACTGAGAAGAGAATCAGCACATTCGATCGTTACTGAAGGAAGTATA
GTAtaactttcactttcaaaacattaaaatatgCTGGAAATGAATTGGAT
CGAGAATCACCATTATTTCTGCAACTCGTTTACGACATTTTATTTCTGAC
TATCCTTCTAAGTTAGttcaattttgagttttttactttgaacccccccc
cccatccaGACCAACCACAGCTATATCCCAGACCCCCGTCTATTATGTAC
TAAAGGAGTAAACACTACTTGGAAAACTTTATTTTAGATTTccgttttta
ttgaatttattgCGTAAACAGTTTCTATGCAAATTGCAAAGGTCAGCGAA
ATTTTCTCAACGAAACACTTTCTATTTGCGTAATAAGAATTACTATGCCA
GTAAATTaattaatgatttttctttgaaaataat Run BLAST on NCBI protein sequence of TCONS_00044331-protein >TCONS_00044331-protein ID=TCONS_00044331-protein|Name=TCONS_00044331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MDWNIASIIATVISLASLLFSLIALLICVSQQLWKKRDAILLFTIFLVDI
AISCILATMNITQLKNLEITNVGRRVLSNMFLFMFLLSWGVQCLIAVNRY
IVIIFPFVYKKVLSRKCLCILVSSMCSLCVAGCILSSALWTSSDSTSYDR
KTLYRSIWVRLSPIVVIIVTVLHVLFLIMIFIMECYLWKVARGHQNRYRS
ITHSVNSTRDPEAKRPSITQTLQKRLSFSTQRMAVRRTPFFLLGAHFCTI
IPYCIIALVYALKNRRLFESSTFDYLCLFLLVVNAFRPIINVFHHISSTK
MKKFKLSLQMFLTKNSELRTDYYIENHKEVENIFKLRRESAHSIVTEGSI
V Run BLAST on NCBI transcript from alignment at sc0005387:737..3420 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044331 ID=TCONS_00044331|Name=TCONS_00044331|organism=Clytia hemisphaerica|type=transcript|length=2684bp|location=Sequence derived from alignment at sc0005387:737..3420 (Clytia hemisphaerica)
attattttcaaagaaaaatcattaattAATTTACTGGCATAGTAATTCTT
ATTACGCAAATAGAAAGTGTTTCGTTGAGAAAATTTCGCTGACCTTTGCA
ATTTGCATAGAAACTGTTTACGcaataaattcaataaaaacggAAATCTA
AAATAAAGTTTTCCAAGTAGTGTTTACTCCTTTAGTACATAATAGACGGG
GGTCTGGGATATAGCTGTGGTTGGTCtggatgggggggggggttcaaagt
aaaaaactcaaaattgaaCTAACTTAGAAGGATAGTCAGAAATAAAATGT
CGTAAACGAGTTGCAGAAATAATGGTGATTCTCGATCCAATTCATTTCCA
GcatattttaatgttttgaaagtgaaagttaTACTATACTTCCTTCAGTA
ACGATCGAATGTGCTGATTCTCTTCTCAGTTTAAATATATTCTCCACCTC
TTTGTGATTTTCAATGTAATAATCCGTACGAAGCTCAGAATTCTTCGTTA
AAAACATTTGTAAAGAAAGtttaaactttttcatcttAGTGGATGAAATA
TGATGGAAAACGTTTATGATTGGTCGAAATGCGTTGACAACCAatagaaa
taaacaaagataATCGAACGTTGAACTTTCAAACAATCGTCTGTTCTTCA
AAGCGTAGACGAGTGCTATAATACAGTAAGGAATAATCGTGCAGAAATga
gcgcccaaaagaaagaagggCGTACGACGGACCGCCATTCGTTGTGTCGA
AAAACTGAGGcgtttttgtaaagtttgtgtGATACTTGGCCGCTTAGCCT
CAGGATCACGAGTTGAATTGACTGAATGAGTTATTGAACGATATCTGTTT
TGATGTCCTCTGGCAACTTTCCAAAGATAACACTCCATAATGAAAATCAT
TATTAGAAACAAAACATGTAAAACAGTGACTATAATGACCACTATTGGTG
ATAAGCGTACCCATATCGAGCGATACAATGTTTTTCTATCATAGCTTGTA
GAATCAGAGCTCGTCCAAAGAGCACTTGATAAAATACATCCAGCAACACA
TAACGAACACATTGATGATACCAAAATGCATAGACATTTTCGACTTAACA
CCTTCTTGTAGACAAATGGAAATATGATCACAATATAGCGATTGACTGCA
ATCAAACACTGCACACCCCAAGATAAGaggaacataaacaaaaacatatT
CGATAAAACTCGTCTACCCACATTGGtaatttccagatttttcaaTTGGG
TAATGTTCATTGTTGCCAGGATACACGATATTGCAATGTCCACCAAAAAG
ATTGTAAAAAGCAAGATAGCGTCTCTCTTTTTCCATAACTGCTGTGAAAC
GCAGATGAGAAGTGCGATTAAACTGAATAAGAGTGATGCCAGTGATATTA
CAGTGGCAATTATTGACGCGATATTCCAATCCATGTTTTTGGAAATGTTT
GTTCGCAGTGCGTTTTATTTCCTTCTATTATAGATTCATGATACTTTTGC
AATGTTATCTATAAATGAAAGAAGAAATACAATGTTAAACTTTATTTGAA
GAATTTATTGGACACCAGCCGTCCATTCAACTTTTTCCAAAGACTTCAAG
ACACACCACCTACGCTAGGATGTCTCAATTTTGAGACCGTTTCAGGAGGA
AATAACACATTTATAAATTCACTGATTTTTCTCATATGGCAAAGCACAAC
AAACAAAAATCAAGgcaacaaaatagaaaaatatgtcACAATAAATCATT
CAAACACCTCATTACAATTTCTATTTATAATTACAATTCTaattaaacaa
atttgagtgtcgctaaagataaaaaacggaaaatttatttttggcaTATT
ATTAACACGTCCTGGAGGCCAAACGTGTGAATGTAATGTAATCAGGGGAA
TTTGATATTGACAGTTATCATAATTACTTTATTGTTGACAGATTCAGTTA
GTGACGCAAACATTCCAACTATGCTACAATGTTCTGACATAATAAAAAGA
CCTGACAAGTTTTACTTGCTGGTAACACAAACACCTCCCAACAAAAATTC
GACCGACCTccaaccccggggggggggcactcgatctgaaaacgaccata
cgttcggcccaaaatttggcttctaaaatcggactcttacagtgcagtga
atttccatgaaaaatcatacccttacagtgcactttttcaaaatttctcg
cccgtaagggcgaaattttttgcaattttccaagaaaatgtggaattttt
cctccaaaattgacctaTTTtataatttcctacccttacagtgcactagc
tgaactatgaaaaacctacccttaagggcccaACGTCCGGGCCTCCACCG
CTACATAAGGGGCCCACAAAGCTGGCCCACTATTACACTATTGCCAGCGT
CTGCCCGTCCACATCTCAAAAGTAAAAGCTCAAATTCCCGAAATATGATT
TAGCCTACAATATGTAGGCTAATCTATTGTTCGCGTcaaacaaaatgttt
tcaacaaaaaaaactaaaattagaAGGTGCTGAGGCAAGAAGcctgagaa
attttgaaacgaGAGCGAACAATACACAAAGGTTATTTCTCTTTTATTCT
ATTATTGTCTTACTTAATGCCTATTGTGGGAATTAAATCTCttttaaatt
atttcaaaaattcaaatttgaaatctGAATGACG Coding sequence (CDS) from alignment at sc0005387:737..3420 >TCONS_00044331 ID=TCONS_00044331|Name=TCONS_00044331|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0005387:737..3420 (Clytia hemisphaerica)
ttaTACTATACTTCCTTCAGTAACGATCGAATGTGCTGATTCTCTTCTCA
GTTTAAATATATTCTCCACCTCTTTGTGATTTTCAATGTAATAATCCGTA
CGAAGCTCAGAATTCTTCGTTAAAAACATTTGTAAAGAAAGtttaaactt
tttcatcttAGTGGATGAAATATGATGGAAAACGTTTATGATTGGTCGAA
ATGCGTTGACAACCAatagaaataaacaaagataATCGAACGTTGAACTT
TCAAACAATCGTCTGTTCTTCAAAGCGTAGACGAGTGCTATAATACAGTA
AGGAATAATCGTGCAGAAATgagcgcccaaaagaaagaagggCGTACGAC
GGACCGCCATTCGTTGTGTCGAAAAACTGAGGcgtttttgtaaagtttgt
gtGATACTTGGCCGCTTAGCCTCAGGATCACGAGTTGAATTGACTGAATG
AGTTATTGAACGATATCTGTTTTGATGTCCTCTGGCAACTTTCCAAAGAT
AACACTCCATAATGAAAATCATTATTAGAAACAAAACATGTAAAACAGTG
ACTATAATGACCACTATTGGTGATAAGCGTACCCATATCGAGCGATACAA
TGTTTTTCTATCATAGCTTGTAGAATCAGAGCTCGTCCAAAGAGCACTTG
ATAAAATACATCCAGCAACACATAACGAACACATTGATGATACCAAAATG
CATAGACATTTTCGACTTAACACCTTCTTGTAGACAAATGGAAATATGAT
CACAATATAGCGATTGACTGCAATCAAACACTGCACACCCCAAGATAAGa
ggaacataaacaaaaacatatTCGATAAAACTCGTCTACCCACATTGGta
atttccagatttttcaaTTGGGTAATGTTCATTGTTGCCAGGATACACGA
TATTGCAATGTCCACCAAAAAGATTGTAAAAAGCAAGATAGCGTCTCTCT
TTTTCCATAACTGCTGTGAAACGCAGATGAGAAGTGCGATTAAACTGAAT
AAGAGTGATGCCAGTGATATTACAGTGGCAATTATTGACGCGATATTCCA
ATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044331-exon-sc0005387-1491911889:737..3420 | TCONS_00044331-exon-sc0005387-1491911889:737..3420 | Clytia hemisphaerica | exon |
| TCONS_00044331-exon-sc0005387-1510915933:737..3420 | TCONS_00044331-exon-sc0005387-1510915933:737..3420 | Clytia hemisphaerica | exon |
| TCONS_00044331-exon-sc0005387-1575043694:737..3420 | TCONS_00044331-exon-sc0005387-1575043694:737..3420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005387 | supercontig | sc0005387:737..3420 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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