TCONS_00044330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044330
Unique NameTCONS_00044330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044330 ID=TCONS_00044330|Name=TCONS_00044330|organism=Clytia hemisphaerica|type=transcript|length=596bp
CTCAGATTGTTTGGTTTTTGGAACATTTCTCAGCTCATATGCAAGATGGG
GATGCCTCTTATTGTATACAGCTTGCTCTTTAGAGCCAGGTGTTATATCA
TATACCATTGGGCAAGTAATCAAAGTGGCCTTCCCAAAATCAATAATGCA
AGGGGAAAGCGAAGGCCTTAAAAGAATATTATCTCCATGCAAATCATTGT
GGAGGATGTTTCTCTCATGAATAAAGGCAAGACCTTCAACCAACTCCCTG
CAAATTTTGAACCAttgtgattttttaattttattcttcCCAAGCGAAGA
TCGCAATGTTTGAGACACTGAAATACTGGTTTTTGAACTTGATACAAACT
CCATTAAGATTGCACCAGATTCAAGCATGCCAAATAGGTATGGTACAAAA
CTAGACCCTGCAAGGTGTTGAAGTACCAAGGCTTCAGCTCTCAAATCTGC
CATAGTTCCTCTAATACTTTTTTTGGCGCATGTAATGCCTAGAAAGTTTA
TCTTACATAAAACAACCTCTCCAAAAACCCCAGACCACTTTGGATACCCA
TTGCTGTAGAAGGAAATTTTGTCCTTGGTGAAGGATGGGATGgtag
Run BLAST on NCBI

protein sequence of TCONS_00044330-protein

>TCONS_00044330-protein ID=TCONS_00044330-protein|Name=TCONS_00044330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
TIPSFTKDKISFYSNGYPKWSGVFGEVVLCKINFLGITCAKKSIRGTMAD
LRAEALVLQHLAGSSFVPYLFGMLESGAILMEFVSSSKTSISVSQTLRSS
LGKNKIKKSQWFKICRELVEGLAFIHERNILHNDLHGDNILLRPSLSPCI
IDFGKATLITCPMVYDITPGSKEQAVYNKRHPHLAYELRNVPKTKQSE
Run BLAST on NCBI

transcript from alignment at sc0005385:1703..2298

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044330 ID=TCONS_00044330|Name=TCONS_00044330|organism=Clytia hemisphaerica|type=transcript|length=596bp|location=Sequence derived from alignment at sc0005385:1703..2298 (Clytia hemisphaerica)
ctacCATCCCATCCTTCACCAAGGACAAAATTTCCTTCTACAGCAATGGG
TATCCAAAGTGGTCTGGGGTTTTTGGAGAGGTTGTTTTATGTAAGATAAA
CTTTCTAGGCATTACATGCGCCAAAAAAAGTATTAGAGGAACTATGGCAG
ATTTGAGAGCTGAAGCCTTGGTACTTCAACACCTTGCAGGGTCTAGTTTT
GTACCATACCTATTTGGCATGCTTGAATCTGGTGCAATCTTAATGGAGTT
TGTATCAAGTTCAAAAACCAGTATTTCAGTGTCTCAAACATTGCGATCTT
CGCTTGGgaagaataaaattaaaaaatcacaaTGGTTCAAAATTTGCAGG
GAGTTGGTTGAAGGTCTTGCCTTTATTCATGAGAGAAACATCCTCCACAA
TGATTTGCATGGAGATAATATTCTTTTAAGGCCTTCGCTTTCCCCTTGCA
TTATTGATTTTGGGAAGGCCACTTTGATTACTTGCCCAATGGTATATGAT
ATAACACCTGGCTCTAAAGAGCAAGCTGTATACAATAAGAGGCATCCCCA
TCTTGCATATGAGCTGAGAAATGTTCCAAAAACCAAACAATCTGAG

Coding sequence (CDS) from alignment at sc0005385:1703..2298

>TCONS_00044330 ID=TCONS_00044330|Name=TCONS_00044330|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0005385:1703..2298 (Clytia hemisphaerica)
acCATCCCATCCTTCACCAAGGACAAAATTTCCTTCTACAGCAATGGGTA
TCCAAAGTGGTCTGGGGTTTTTGGAGAGGTTGTTTTATGTAAGATAAACT
TTCTAGGCATTACATGCGCCAAAAAAAGTATTAGAGGAACTATGGCAGAT
TTGAGAGCTGAAGCCTTGGTACTTCAACACCTTGCAGGGTCTAGTTTTGT
ACCATACCTATTTGGCATGCTTGAATCTGGTGCAATCTTAATGGAGTTTG
TATCAAGTTCAAAAACCAGTATTTCAGTGTCTCAAACATTGCGATCTTCG
CTTGGgaagaataaaattaaaaaatcacaaTGGTTCAAAATTTGCAGGGA
GTTGGTTGAAGGTCTTGCCTTTATTCATGAGAGAAACATCCTCCACAATG
ATTTGCATGGAGATAATATTCTTTTAAGGCCTTCGCTTTCCCCTTGCATT
ATTGATTTTGGGAAGGCCACTTTGATTACTTGCCCAATGGTATATGATAT
AACACCTGGCTCTAAAGAGCAAGCTGTATACAATAAGAGGCATCCCCATC
TTGCATATGAGCTGAGAAATGTTCCAAAAACCAAACAATCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027963XLOC_027963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044330-exon-sc0005385-1491911889:1703..2298TCONS_00044330-exon-sc0005385-1491911889:1703..2298Clytia hemisphaericaexon
TCONS_00044330-exon-sc0005385-1510915933:1703..2298TCONS_00044330-exon-sc0005385-1510915933:1703..2298Clytia hemisphaericaexon
TCONS_00044330-exon-sc0005385-1575043694:1703..2298TCONS_00044330-exon-sc0005385-1575043694:1703..2298Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044330-proteinTCONS_00044330-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005385supercontigsc0005385:1703..2298 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26609	1.39655	0.311393	0.65579	32.3068	25.6134	11.6556	14.6602	16.0248	9.99976	8.40222	13.0917	7.86478	7.6468	5.98609	5.25546	7.95177	7.07727	3.18633	3.25823	6.81197	6.39805	3.25801	2.98099	9.47433	8.89084	1.78104	0.886952	2.54043	1.24401
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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