TCONS_00044319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044319
Unique NameTCONS_00044319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044319 ID=TCONS_00044319|Name=TCONS_00044319|organism=Clytia hemisphaerica|type=transcript|length=888bp
ATAtttctgtttttcaaaatattctaaaaaaattgattacaaTTTGACTA
AGTAAGATAAAGAAATATCCTTAAAAGACTGGATGTATATTTATATGCAT
TTTAAGTTTAATTCTAAAGCTCTACTCAGCAAATTTGACTATAAAGAATA
GCTATTCGATGATAGTTCGATCATATTGTCGAATCATATTGCCGTAAAAC
TTGAAATAGCTAGTACGATATTCTAGTGCGGTTTGCTATCCTCAGGACTG
TTTTACTATTTCAactaaattttatcaaatagaaaaagaaatgGATGGTC
TCGTAAGGAGTTACCAACAGACGTTCGCATTTCATTTGGGTCTTCTTTGT
TTCTCCATTTTCCGGCGGGGTGAAAGGATCTGAAGAGCGAGGAAATTGAT
AGGAAACGCAGGGTCTTCATGCTTCCTACCTCCGATTGCAAATGATTTTC
ctttatttctttaaattttaataaaaacaataaaaatatcattaaataTG
AATATGCAACCGTAGTATTCTGTTATTTCATTGTCCTTTTCTTATTTATC
GGTGTTCGTTTTTTGAGTTATCAAAGTATCTGGGCGTGCTCCGTGTGCAC
CTTTAGTGACGTCATAAGCTGCTTCGTCATCAAAAGGCGCCGAATGAGTG
GCGCAAGCAACATCAAGTTCAGGCGCTTGATGTGGCATTGTTCGAACATC
GACTTCTCTTACTTCATGAGCACCATAACAAGCATGATCTTCAATTCTAT
CTTGATGTGCTCCTGTCCGAAAATCTTCAACATTACCTTCTATATTTCGG
ACATCTTCAACTTGGTTGCCAAGCAATGGTTCGTTTTCATTATTTAGATT
TAGATGCTGCTGCTGTCGACAGCAACACTCTGCCAGTG
Run BLAST on NCBI

protein sequence of TCONS_00044319-protein

>TCONS_00044319-protein ID=TCONS_00044319-protein|Name=TCONS_00044319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
LAECCCRQQQHLNLNNENEPLLGNQVEDVRNIEGNVEDFRTGAHQDRIED
HACYGAHEVREVDVRTMPHQAPELDVACATHSAPFDDEAAYDVTKGAHGA
RPDTLITQKTNTDK
Run BLAST on NCBI

transcript from alignment at sc0005362:1..888

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044319 ID=TCONS_00044319|Name=TCONS_00044319|organism=Clytia hemisphaerica|type=transcript|length=888bp|location=Sequence derived from alignment at sc0005362:1..888 (Clytia hemisphaerica)
CACTGGCAGAGTGTTGCTGTCGACAGCAGCAGCATCTAAATCTAAATAAT
GAAAACGAACCATTGCTTGGCAACCAAGTTGAAGATGTCCGAAATATAGA
AGGTAATGTTGAAGATTTTCGGACAGGAGCACATCAAGATAGAATTGAAG
ATCATGCTTGTTATGGTGCTCATGAAGTAAGAGAAGTCGATGTTCGAACA
ATGCCACATCAAGCGCCTGAACTTGATGTTGCTTGCGCCACTCATTCGGC
GCCTTTTGATGACGAAGCAGCTTATGACGTCACTAAAGGTGCACACGGAG
CACGCCCAGATACTTTGATAACTCAAAAAACGAACACCGATAAATAAGAA
AAGGACAATGAAATAACAGAATACTACGGTTGCATATTCAtatttaatga
tatttttattgtttttattaaaatttaaagaaataaagGAAAATCATTTG
CAATCGGAGGTAGGAAGCATGAAGACCCTGCGTTTCCTATCAATTTCCTC
GCTCTTCAGATCCTTTCACCCCGCCGGAAAATGGAGAAACAAAGAAGACC
CAAATGAAATGCGAACGTCTGTTGGTAACTCCTTACGAGACCATCcattt
ctttttctatttgataaaatttagtTGAAATAGTAAAACAGTCCTGAGGA
TAGCAAACCGCACTAGAATATCGTACTAGCTATTTCAAGTTTTACGGCAA
TATGATTCGACAATATGATCGAACTATCATCGAATAGCTATTCTTTATAG
TCAAATTTGCTGAGTAGAGCTTTAGAATTAAACTTAAAATGCATATAAAT
ATACATCCAGTCTTTTAAGGATATTTCTTTATCTTACTTAGTCAAAttgt
aatcaatttttttagaatattttgaaaaacagaaaTAT

Coding sequence (CDS) from alignment at sc0005362:1..888

>TCONS_00044319 ID=TCONS_00044319|Name=TCONS_00044319|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0005362:1..888 (Clytia hemisphaerica)
CTGGCAGAGTGTTGCTGTCGACAGCAGCAGCATCTAAATCTAAATAATGA
AAACGAACCATTGCTTGGCAACCAAGTTGAAGATGTCCGAAATATAGAAG
GTAATGTTGAAGATTTTCGGACAGGAGCACATCAAGATAGAATTGAAGAT
CATGCTTGTTATGGTGCTCATGAAGTAAGAGAAGTCGATGTTCGAACAAT
GCCACATCAAGCGCCTGAACTTGATGTTGCTTGCGCCACTCATTCGGCGC
CTTTTGATGACGAAGCAGCTTATGACGTCACTAAAGGTGCACACGGAGCA
CGCCCAGATACTTTGATAACTCAAAAAACGAACACCGATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027952XLOC_027952Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044319-proteinTCONS_00044319-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044319-exon-sc0005362-1491911889:1..888TCONS_00044319-exon-sc0005362-1491911889:1..888Clytia hemisphaericaexon
TCONS_00044319-exon-sc0005362-1510915933:1..888TCONS_00044319-exon-sc0005362-1510915933:1..888Clytia hemisphaericaexon
TCONS_00044319-exon-sc0005362-1575043694:1..888TCONS_00044319-exon-sc0005362-1575043694:1..888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005362supercontigsc0005362:1..888 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.281848	0.05568	0.549479	0.384296	0.67904	0.628142	1.10676	0.606538	1.71821	1.71798	2.35129	1.39827	1.40721	0.769999	1.00109	1.43545	1.00807	0.762814	0.455088	0.707743	1.19707	1.07579	0	0.0764616	1.28091	0.477019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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