TCONS_00044315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044315
Unique NameTCONS_00044315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044315 ID=TCONS_00044315|Name=TCONS_00044315|organism=Clytia hemisphaerica|type=transcript|length=472bp
TTTATAGAACCGGAGCGTCACTACATTTTTGAATACGCCAAAGAGTTTGG
GTTCCTCAGACTTTCGCCAGAAACCAGGAAGAGACTGAAAATCCCAGTCA
AAATTGTCAATTTAGACCCGAACAAGGAGAAATGTTTGGGTGATAGGATG
AGCagattcattttgaaatattttttgggtTACGATGATATTATTATGAA
CAGCATTAAGAAGATTTCTGACGCTGACAATAATACAgGATTTATGCTGA
ATGTGATGACAGGGGAACATTATAAATTTGTACCATGGGGAATCGGACGA
TCGTCATATTTCATCTCGTTGCTTCTCATGTTTCTTTTCACAATTTCTAT
TTCAACATTACTTCGATATTGTCATCAGCAAGTCTTCTTCTTTATCATTC
ACGTTCTACGAATGATGGATATGAATGTGGTTTTAGCATTCCCAATCGCT
CCTTTGTTCACTGTCATACTAT
Run BLAST on NCBI

protein sequence of TCONS_00044315-protein

>TCONS_00044315-protein ID=TCONS_00044315-protein|Name=TCONS_00044315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
FIEPERHYIFEYAKEFGFLRLSPETRKRLKIPVKIVNLDPNKEKCLGDRM
SRFILKYFLGYDDIIMNSIKKISDADNNTGFMLNVMTGEHYKFVPWGIGR
SSYFISLLLMFLFTISISTLLRYCHQQVFFFIIHVLRMMDMNVVLAFPIA
PLFTVIL
Run BLAST on NCBI

transcript from alignment at sc0005351:1..4030-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044315 ID=TCONS_00044315|Name=TCONS_00044315|organism=Clytia hemisphaerica|type=transcript|length=4030bp|location=Sequence derived from alignment at sc0005351:1..4030- (Clytia hemisphaerica)
TTTATAGAACCGGAGCGTCACTACATTTTTGAATACGCCAAAGAGTTTGG
GTTCCTCAGACTTTCGCCAGAAACCAGGAAGAGACTGAAAATCCCAGTCA
AAATTGTCAATTTAGGTAAGGTACCCTCTATTTTTATTGTTTTTTTAAAT
GGCCGTGAATTTCAAACTTCTGCAGATCCTCACTTTACTCTCTATCCCTG
AATCTTTACTTCAAGGGATGAATTTCATCATTTCTTAACAACAGACTTTT
CTAATCATTTATCAAATTTTCAACAATCAGAAAATTAACAAGTACTTAAT
TTATACATTTGTATTCATTCTAACGTTGGCAGAACAGATAAAGTGGTGTT
TGTATCAAAAAGTCCCGGTGGGACCCCCACCCCACTCAAAAATTTGGCCA
AAATTACAAATCTATATAAATTGCTGGTAAAAATACCCTGCAATTTCAGC
CAACTGGGAAATTGACTTTTACCACCAAATCCATCCCACTGGATTTTTTC
AGCTAAAAACAATAGAGTTCCTATCTACGTTGGGATTTCGATAGACATTT
TTATCCCACTGTGGAAAGAAGTTCCGCCGGGGCTGTGAGACAAGGAAGTA
CGTAGGGATGTGAAAACCTGTCCAAAGCTCGTCAGAATTCGAGTTATGAA
GATTCCACTGTAACAAAAACCACAGTCATTTTTTTGTATTTTAATAATTT
TACCCTGTCTTCATTTTACAGACCCGAACAAGGAGAAATGTTTGGGTGAT
AGGATGAGCAGATTCATTTTGAAATATTTTTTGGGTTACGATGATATTAT
TATGAACAGCATTAAGAAGATTTCTGACGCTGACAATAATACAGGTAATA
TTTTTTCTTCATTGGATGTTAAACCAGATTCAGTCACTGACCTTTTTTTT
AATATTGGACACAGCTTCTCTATCCCGGCCAAGCAGAATTCTTTTTTTTA
AAGTGGTACCCTAATAGTAGCACTACCCGATGTGGAAGAAAAATTTAAAA
CGGAAAAATTCACTGTATTATAAATTGAGCTACATCGAATACAGTGTCAT
TAGAGCACCATTAGGGCCCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAGTAGGTGTTGGGAGCACCTTACTTCAATGGGGGCAACTGGAAAA
TGTGCTGAGACTACGAACTAAGAAAGCTTTTATTGTATTTTTAATTCATA
GGATTTATGCTGAATGTGATGACAGGGGAACATTATAAATTTGTACCATG
GGGAATCGGACGATCGTCATATTTCATCTCGTTGCTTCTCATGTTTCTTT
TCGTAAGTTACACTCTTATACGGGCGTTGTTAAAATTTTTTGTCCTTTTT
AGGGCAAGAAAATGTCAAATTTTCCAAAAGTCTCATTCGAATGTCTTTAA
TGTTTTCTCGATTTTTTGCAAAAAAAATGGCCCCGTTAAGACAAAATTTG
TCCTAAAAAGACCAAAATTGAGTGGTCTCTGTGTCAAAATGTCCCCAAAA
ATTTTAGTACATGTGTACTTAAATACCACTTTAAAAAAGGGGTGGTTGTA
TGCAAAAACAATTCTCGAAAACTGTTGTAGTACTCATACTCATACATCTC
TGAGATTTTAGTACCGTCCCTGATCCTGAGAAGTTATTTGTTCCAATATT
TTCTTGTGTTCTTCCTCTCTTTCAGACAATTTCTATTTCAACATTACTTC
GATATTGTCATCAGCAAGTCTTCTTCTTTATCAGTAAGTATTATATATCA
TGCAGGTTTTGCTACAAATGTCTGATTTATGGGATTAGTTGCTCTGCATG
CAACACTATAAGCCATTTCACGATCGAGAGGAATCGTGAGTAATTCGGAC
CACCACGCTATGACTACGATTTTCCATTGGTCTAAAATCTTTGAGGTTTT
TGCGTCTAACCAATGGGAAGCCGTAATGGGGGCGCAATCAGTCCTGATGT
TAGATGGCCTGTACATCACTGCGATAGCTTACCACCCTAAATGCCAACAG
ACTTGTGTAGGTCTGTTTCGATTAGAGAAATTCTGTGTCTCGCTTGTACC
AGCTTTTTGATACTAAAAAAAGGAAGATATCATTGCATTGGGGTTATAAT
GTAACGTCACTTGAATGAGTTTGCATGCTAAAAATAAACATTAATCCACT
GCGTAGACAACTGCAAGAGACTGGATGCTCCAGACAGGAATTATGCCTAA
CCCCAACTAACTGTCAGCTCTACTGTAATTTTGACGTCAAATCTTGTCTT
GATCATACTGACGTCGGTATGTTTTTGAACTTCAAGGTGCTGCATTTCTT
TGTGTTTAGTCAATATATTTCTTTGTTTTAGTCAGAGAGTTGTTGTAATA
CATTTTTTGCTCAGAAGTTCATGCTCTTTCAGATGGCACCAATCATTTTC
GTTTATTTTGACTTTTGAAAATAAGCTATTTCTCTATCCCTTATTTTCCC
TTGCAGTTTTGCCTATCTATGGCGTCACTATTTTGGTCACAAAATGCCAC
GGGACCTGAGACTTGGCCACCTACTATAAATGTTTGTAATACGCCTAAGG
GGTCAAGAATATTGATACGACAAAAACTGAGAAAAAATTTCAGGTCGCCT
TAGTTCATTTTGAGGGTAATTTTTGACGGGTCAAAACGTTCCTATATCTA
GTTTAATTTTTATCCCCCGTATAATTTTTTTATGGTCTTTACTTTTCCGT
TACAGTTCACGTTCTACGAATGATGGATATGAATGTGGTTTTAGCATTCC
CAATCGCTCCTTTGTTCACTGTCATACTAT

Coding sequence (CDS) from alignment at sc0005351:1..4030-

>TCONS_00044315 ID=TCONS_00044315|Name=TCONS_00044315|organism=Clytia hemisphaerica|type=CDS|length=2355bp|location=Sequence derived from alignment at sc0005351:1..4030- (Clytia hemisphaerica)
TTCACGTTCTACGAATGATGGATATGAATGTGGTTTTAGCATTCCCAATC
GCTCCTTTGTTCACTGTCATACTAACAATTTCTATTTCAACATTACTTCG
ATATTGTCATCAGCAAGTCTTCTTCTTTATCAGATTTATGCTGAATGTGA
TGACAGGGGAACATTATAAATTTGTACCATGGGGAATCGGACGATCGTCA
TATTTCATCTCGTTGCTTCTCATGTTTCTTTTCACCCGAACAAGGAGAAA
TGTTTGGGTGATAGGATGAGCAGATTCATTTTGAAATATTTTTTGGGTTA
CGATGATATTATTATGAACAGCATTAAGAAGATTTCTGACGCTGACAATA
ATACAGTTTATAGAACCGGAGCGTCACTACATTTTTGAATACGCCAAAGA
GTTTGGGTTCCTCAGACTTTCGCCAGAAACCAGGAAGAGACTGAAAATCC
CAGTCAAAATTGTCAATTTAGTTCACGTTCTACGAATGATGGATATGAAT
GTGGTTTTAGCATTCCCAATCGCTCCTTTGTTCACTGTCATACTAACAAT
TTCTATTTCAACATTACTTCGATATTGTCATCAGCAAGTCTTCTTCTTTA
TCAGATTTATGCTGAATGTGATGACAGGGGAACATTATAAATTTGTACCA
TGGGGAATCGGACGATCGTCATATTTCATCTCGTTGCTTCTCATGTTTCT
TTTCACCCGAACAAGGAGAAATGTTTGGGTGATAGGATGAGCAGATTCAT
TTTGAAATATTTTTTGGGTTACGATGATATTATTATGAACAGCATTAAGA
AGATTTCTGACGCTGACAATAATACAGTTTATAGAACCGGAGCGTCACTA
CATTTTTGAATACGCCAAAGAGTTTGGGTTCCTCAGACTTTCGCCAGAAA
CCAGGAAGAGACTGAAAATCCCAGTCAAAATTGTCAATTTAGTTCACGTT
CTACGAATGATGGATATGAATGTGGTTTTAGCATTCCCAATCGCTCCTTT
GTTCACTGTCATACTAACAATTTCTATTTCAACATTACTTCGATATTGTC
ATCAGCAAGTCTTCTTCTTTATCAGATTTATGCTGAATGTGATGACAGGG
GAACATTATAAATTTGTACCATGGGGAATCGGACGATCGTCATATTTCAT
CTCGTTGCTTCTCATGTTTCTTTTCACCCGAACAAGGAGAAATGTTTGGG
TGATAGGATGAGCAGATTCATTTTGAAATATTTTTTGGGTTACGATGATA
TTATTATGAACAGCATTAAGAAGATTTCTGACGCTGACAATAATACAGTT
TATAGAACCGGAGCGTCACTACATTTTTGAATACGCCAAAGAGTTTGGGT
TCCTCAGACTTTCGCCAGAAACCAGGAAGAGACTGAAAATCCCAGTCAAA
ATTGTCAATTTAGTTCACGTTCTACGAATGATGGATATGAATGTGGTTTT
AGCATTCCCAATCGCTCCTTTGTTCACTGTCATACTAACAATTTCTATTT
CAACATTACTTCGATATTGTCATCAGCAAGTCTTCTTCTTTATCAGATTT
ATGCTGAATGTGATGACAGGGGAACATTATAAATTTGTACCATGGGGAAT
CGGACGATCGTCATATTTCATCTCGTTGCTTCTCATGTTTCTTTTCACCC
GAACAAGGAGAAATGTTTGGGTGATAGGATGAGCAGATTCATTTTGAAAT
ATTTTTTGGGTTACGATGATATTATTATGAACAGCATTAAGAAGATTTCT
GACGCTGACAATAATACAGTTTATAGAACCGGAGCGTCACTACATTTTTG
AATACGCCAAAGAGTTTGGGTTCCTCAGACTTTCGCCAGAAACCAGGAAG
AGACTGAAAATCCCAGTCAAAATTGTCAATTTAGTTCACGTTCTACGAAT
GATGGATATGAATGTGGTTTTAGCATTCCCAATCGCTCCTTTGTTCACTG
TCATACTAACAATTTCTATTTCAACATTACTTCGATATTGTCATCAGCAA
GTCTTCTTCTTTATCAGATTTATGCTGAATGTGATGACAGGGGAACATTA
TAAATTTGTACCATGGGGAATCGGACGATCGTCATATTTCATCTCGTTGC
TTCTCATGTTTCTTTTCACCCGAACAAGGAGAAATGTTTGGGTGATAGGA
TGAGCAGATTCATTTTGAAATATTTTTTGGGTTACGATGATATTATTATG
AACAGCATTAAGAAGATTTCTGACGCTGACAATAATACAGTTTATAGAAC
CGGAGCGTCACTACATTTTTGAATACGCCAAAGAGTTTGGGTTCCTCAGA
CTTTCGCCAGAAACCAGGAAGAGACTGAAAATCCCAGTCAAAATTGTCAA
TTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027948XLOC_027948Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044315-proteinTCONS_00044315-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044315-exon-sc0005351-1575043694:3916..4030TCONS_00044315-exon-sc0005351-1575043694:3916..4030Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1575043694:3187..3309TCONS_00044315-exon-sc0005351-1575043694:3187..3309Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1575043694:1479..1579TCONS_00044315-exon-sc0005351-1575043694:1479..1579Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1575043694:1048..1105TCONS_00044315-exon-sc0005351-1575043694:1048..1105Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1575043694:1..75TCONS_00044315-exon-sc0005351-1575043694:1..75Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1510915933:3916..4030TCONS_00044315-exon-sc0005351-1510915933:3916..4030Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1510915933:3187..3309TCONS_00044315-exon-sc0005351-1510915933:3187..3309Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1510915933:1479..1579TCONS_00044315-exon-sc0005351-1510915933:1479..1579Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1510915933:1048..1105TCONS_00044315-exon-sc0005351-1510915933:1048..1105Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1510915933:1..75TCONS_00044315-exon-sc0005351-1510915933:1..75Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1491911889:3916..4030TCONS_00044315-exon-sc0005351-1491911889:3916..4030Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1491911889:3187..3309TCONS_00044315-exon-sc0005351-1491911889:3187..3309Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1491911889:1479..1579TCONS_00044315-exon-sc0005351-1491911889:1479..1579Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1491911889:1048..1105TCONS_00044315-exon-sc0005351-1491911889:1048..1105Clytia hemisphaericaexon
TCONS_00044315-exon-sc0005351-1491911889:1..75TCONS_00044315-exon-sc0005351-1491911889:1..75Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005351supercontigsc0005351:1..4030 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.3471	15.8031	8.97291	7.8328	5.81182	0.881034	3.7345	4.59673	3.38149	5.22059	5.18374	6.10438	4.54605	4.19267	6.2167	6.78251	5.89158	4.41376	8.67953	2.75266	8.29851	8.84877	16.2052	19.6508	5.32799	1.47658	6.01934	3.83777	17.4271	16.0523
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019144Membralin
Blast
[Close]
BLAST of TCONS_00044315 vs. Swiss-Prot (Human)
Match: MBRL (Membralin OS=Homo sapiens GN=TMEM259 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.374e-56
Identity = 82/154 (53.25%), Postives = 117/154 (75.97%), Query Frame = 1 
Query:   10 PERHYIFEYAKEFGFLRLSPETRKRLKIPVKIVNLDPNKEKCLGDRMSRFILKYFLGYDDIIMNSIKKISDADNNTGFMLNVMTGEHYKFVPWGIGRSSYFISLLLMFLFTISISTLLRYCHQQVFFFIIHVLRMMDMNVVLAFPIAPLFTVIL 471
            P+  YI EY+ E+GFLRLS  TR+RL IPV +V LDP +++C GDR SR +L  FLGYDDI+M+S+K +++ + N GF+ NV++GEHY+FV   + R+SY  +  +M +FT+S+S LLRY H Q+F FI+ +L+M++MN+ +AFP APL TVIL
Sbjct:  205 PQDEYIVEYSLEYGFLRLSQATRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDILMSSVKGLAENEENKGFLRNVVSGEHYRFVSMWMARTSYLAAFAIMVIFTLSVSMLLRYSHHQIFVFIVDLLQMLEMNMAIAFPAAPLLTVIL 358
The following BLAST results are available for this feature:
BLAST of TCONS_00044315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MBRL3.374e-5653.25Membralin OS=Homo sapiens GN=TMEM259 PE=1 SV=1[more]
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