TCONS_00044282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044282
Unique NameTCONS_00044282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044282 ID=TCONS_00044282|Name=TCONS_00044282|organism=Clytia hemisphaerica|type=transcript|length=382bp
TTTGTGTATCACACCAGTTGCACCAATTATGATTGGGACGATTTTAACTT
TATTCAGGTTCCATAAAGTTTTTAATTCTACTGCCAAGTCGGTGTAGTTT
CGGATTTTCTCAATTCGTTTACGGGGTATGTTGTAGTCGGACGGAATTGC
GATGTCAATGATCAGTGCTTCTTTCGTTTGTTTGTTTAGGAAGACGATAT
CGGGTTTATTGTGATCGATTTGGTGGTCGGTCTGGATGGAGAAGTCCCAG
AGAATTTTGGTGGATTCGTTTTCCTCCACTGGATGTGGTTGATGTTCGTA
CCATGGGGTGCGTTCTTGCTTTAAATCGTTTTCACGCATGAGAAGCTCGT
GAATGTACTTGCACAAGTTGTTATGTCTTTGA
Run BLAST on NCBI

protein sequence of TCONS_00044282-protein

>TCONS_00044282-protein ID=TCONS_00044282-protein|Name=TCONS_00044282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
QRHNNLCKYIHELLMRENDLKQERTPWYEHQPHPVEENESTKILWDFSIQ
TDHQIDHNKPDIVFLNKQTKEALIIDIAIPSDYNIPRKRIEKIRNYTDLA
VELKTLWNLNKVKIVPIIIGATGVIHK
Run BLAST on NCBI

transcript from alignment at sc0005291:1833..2214

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044282 ID=TCONS_00044282|Name=TCONS_00044282|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0005291:1833..2214 (Clytia hemisphaerica)
TCAAAGACATAACAACTTGTGCAAGTACATTCACGAGCTTCTCATGCGTG
AAAACGATTTAAAGCAAGAACGCACCCCATGGTACGAACATCAACCACAT
CCAGTGGAGGAAAACGAATCCACCAAAATTCTCTGGGACTTCTCCATCCA
GACCGACCACCAAATCGATCACAATAAACCCGATATCGTCTTCCTAAACA
AACAAACGAAAGAAGCACTGATCATTGACATCGCAATTCCGTCCGACTAC
AACATACCCCGTAAACGAATTGAGAAAATCCGAAACTACACCGACTTGGC
AGTAGAATTAAAAACTTTATGGAACCTGAATAAAGTTAAAATCGTCCCAA
TCATAATTGGTGCAACTGGTGTGATACACAAA

Coding sequence (CDS) from alignment at sc0005291:1833..2214

>TCONS_00044282 ID=TCONS_00044282|Name=TCONS_00044282|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0005291:1833..2214 (Clytia hemisphaerica)
CAAAGACATAACAACTTGTGCAAGTACATTCACGAGCTTCTCATGCGTGA
AAACGATTTAAAGCAAGAACGCACCCCATGGTACGAACATCAACCACATC
CAGTGGAGGAAAACGAATCCACCAAAATTCTCTGGGACTTCTCCATCCAG
ACCGACCACCAAATCGATCACAATAAACCCGATATCGTCTTCCTAAACAA
ACAAACGAAAGAAGCACTGATCATTGACATCGCAATTCCGTCCGACTACA
ACATACCCCGTAAACGAATTGAGAAAATCCGAAACTACACCGACTTGGCA
GTAGAATTAAAAACTTTATGGAACCTGAATAAAGTTAAAATCGTCCCAAT
CATAATTGGTGCAACTGGTGTGATACACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027918XLOC_027918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044282-exon-sc0005291-1491911889:1833..2214TCONS_00044282-exon-sc0005291-1491911889:1833..2214Clytia hemisphaericaexon
TCONS_00044282-exon-sc0005291-1510915933:1833..2214TCONS_00044282-exon-sc0005291-1510915933:1833..2214Clytia hemisphaericaexon
TCONS_00044282-exon-sc0005291-1575043694:1833..2214TCONS_00044282-exon-sc0005291-1575043694:1833..2214Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044282-proteinTCONS_00044282-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005291supercontigsc0005291:1833..2214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.320821	0	0.232195	0	0	0.437072	0.527309	0.698505	0	0	0	0.136578	1.0911	0.566561	0.116448	0.181489	0	0	0	0	0.310188	0.290137	0	0.427541	2.54213	3.44264	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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