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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044267 ID=TCONS_00044267|Name=TCONS_00044267|organism=Clytia hemisphaerica|type=transcript|length=420bp
CAGTCAACGGCGATTGGGGCAAATGGGGAGGATTCAATTCTTGTAACAAA
CGATGTGGAGGAGGTCTACAAACAAGATACAGATCATGCAATAACCCAAC
ACCTGCTCATGGTGGAAAATCATGTCCTGGTTCTCACGCTCACTCGNGAT
ACAGATCATGCAATAACCCAACACCTGCTCATGGTGGAAAATCATGTCCT
GGTTCTCACGCTCACTCGCAATCATGCAACACTCAAAAATGCCCAGTTAA
TGGAAAGTGGGGATCATGGGGCTCATATGGATCATGTAACAATAAATGTG
GTGGAGGTGTTCAAGAACGATTCCGTTATTGTAATAATCCCGCCCCCGCC
CATGGTGGTAGTGGTTGCCCTGGATACGCCAAAATGGTCAGAGCTTGCAA
TACACACAAGTGCCCAGGTA Run BLAST on NCBI transcript from alignment at sc0005268:106..4343- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044267 ID=TCONS_00044267|Name=TCONS_00044267|organism=Clytia hemisphaerica|type=transcript|length=4238bp|location=Sequence derived from alignment at sc0005268:106..4343- (Clytia hemisphaerica)
CAGTCAACGGCGATTGGGGCAAATGGGGAGGATTCAATTCTTGTAACAAA
CGATGTGGAGGAGGTCTACAAACGAGATACAGATCATGTAATAACCCAAC
ACCTGCACATGGTGGAAAATCATGTCCTGGTTCTCCCGCTCACTCACAAT
CATGCAACACTCATAAATGTCCAGGTATTGTCTCTGAACATTATTTAAAA
AATCAGAAATTTCTATAAAGGTTCTTTTGAAAAGCCATCTATGAATGTGT
TTGAAAACTTTGATAGACACGCTTGTTTTTTTATAAGAACCAGTAAATTT
TCGCTGAGCCTGAGATTGTTCTTAAATTTATATTGTTCCAAACAATAGAG
CTATTGTTCTGAGGTCCTAAATCCGAGGTTTTTTCTCTTAAAAAATTGTT
CTTATAAATAAAAAAGCGTGTGAACATAGTCTCATACTGCATAAACGTTG
GTCTTATGGTAAAGTAGTGATAGGTATCTTCTTGCCATGTATTTTTCTTT
AAGGCGATAAAAAAGTTCACTCTACCCTTTCTCTTACACAGTCAATGGCA
ATTGGGGATCATGGGGTTCATATGGATCATGTAACAATAAATGTGGTGGA
GGTGTTCAAGAACGATTCCGTTATTGTAATAATCCCGCCCCCGCCCATGG
TGGTAAAGGATGTCCTGGATACGCCAAAATGGTCAGAGCTTGCAATACTC
ATAAATGCCCAGGTGAATATTTTTATCTGTCATGTTATGCCAGTAACTGA
TGAAAATTAGTGTGTTGGGTTTTGTAAATTCTAGTTCCAGGAACTATTGA
AACTGATTTTTCCATCTTCAATCAATAGCACAAGCACTGACCTTTATAAA
CCCTAGACCAAGCTATATTCATCATNATCGATCAAGTTTGATTGTATTGT
GTAGCGCTATTTAAAGATTCATTCCTGAGTCACTTTTGAAGTAGAAAAGG
TTTGATCAATCATATTCCATGAATTACTGTTTTTATGTTTTCAGTAAACG
GTAATTGGGGCAAATGGGGAGGCTTCAATTCTTGCAACAAACGATGTGGA
GGAGGTCTACAAACAAGATACAGATCATGCAATAACCCAACACCTGCTCA
TGGTGGAAAATCATGTCCTGGTTCTCACGCTCACTCGNGATACAGATCAT
GCAATAACCCAACACCTGCTCATGGTGGAAAATCATGTCCTGGTTCTCAC
GCTCACTCGCAATCATGCAACACTCAAAAATGCCCAGGTATTTTTACGCT
TGTTTTTCACTTGTTTTTAAAGGGTTAGTTTAATCGGATGTTTGAAATCT
AGGACCAGTAGATTCCTCGTGCGGTCTAGAGGAAAAATTCCAAATATTCA
ACTTACAGCTTTTTTACTTACTTTTAACGAGATAGACATTTCTTTCTTAT
AAGAAAGTCGTAAATTTTTGAAGCCTTTGGATGTTCTTAGAATGTTCTTA
ACATATTCTTATTTTCACTATTTTTTGAGTAATTTTTTCCATTTTCCTAG
AGGGTTTTAGTGTCCGCAAAGCCTTAAAATATTCTTAACTTATGTTCTTA
ATATTTTGGCCATCGAAGTTTTTTGTTCTTATATAGCTCTTGTGAAAAAA
AATGTGTAAAAAGAGAATTTAAATTTGGTTTCAATTACCGTTTTGTGGAG
ATTTGCAATTTTATATCTTGAAATTAGCTAGGTAAAAAGATATGAAAACT
TTTATTCAGGCCATAGTAGATTATCTTAACCCTATTCAACCTAGGCTTTT
AGGGGCGGTTCAGAACTAGGGGGGGGGGCTTTTCCTGTACCACCCCTTAA
CTTTTGATCTAGTGGGTCTTTTTAGATGAAATTTGGCACACAAGATCCTT
GTCACGTAAGGTAACTTTTGACAAAAAAATTTTTTGATGACGTCACTCAT
CATGCCCAAAGTGAGCAAAAACCTGAAATTTCCTTTGTTCTTATAAATAA
CTATTGTATTCTAACAAAAGCTTTAGAAAAAATTTGCCTGAGTTTAAAAT
GCTTATTTTATCCTAAATATTCAATAAATTACGGTTTAAACGATATATTT
GACATTAAAAATAAATTTGTATTGGAAAAGTGTCAATTTTTGTGACACCT
TACTGTCAGAAATGTCATCATGCTCAAGGTGTGAAAATCTATAGGTGTCA
AATTTTTTCTTATTTTGAAGCTAAATAAAAGTTAGGAATTTACAGAAAAT
TTCAAGGCAAAAGCTCTATTATTTCAGGACCTATTACCAATAGATTGACC
TCCGAACAGAAAGAGCCCCCCCCCCCTAGTACGAATAGGGTTATTACACG
AAAAACAGTCAATTCATGGGCCACAATTGGGGAACATCTGTATGGGAATG
AACCGTAAATTTGAAGCTTTTTTCTAATTTTTTGTAAAATTTGGAAATTA
CTTAAGAATACTCAACCCTCAGCCAAAGTTTATTATTCTTATAAAAAAAG
TGTGTCGGTAAATTCTGCGAATTTTGAAACTTCTAAAAGGGACTCATTTT
ACCTAATTTGACCAATTTTCGATATTTCAAGAAGCAAAAAAGTCAAAATT
TTCTCATTTGTACAACCCTTGTTGGGCTGAGATATTTAATTTNAAAGTGT
GTCGGTAAATTCTGCGAATTTTGAAACTTCTAAAAGGGACTCATTTTACC
TAATTTGACCAATTTTCGATCTTTCAAGAAGCAAAAAAGTCAATATTTTC
TTATTTGTACAACCCTTGTTGGGCTGAAATATTTAATCTACTGATTTTTC
AAGCCCTTACAGGGGTTACAAGGTAAAAAAGAATTCTTTTGGGCGGCACA
TACCCAATTCTCTCAAAAGTTTTAAACTGGGATCAAAAGACTGTTGGGAC
GAGACTAGCCGGTACCAAACCCCCGCAGCGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTATTTCTGTATTGGATGTGTTACTTTGTTCGAGTGTTACAAAGTTTGGA
ATCTTGAAGTAAGCTGTGAGTAGAAGCGAAAAGTTGATGGGGTCAGGTTG
AGTCTAATTATGTCCAACTTTAAGCTTCTTACTGATTGACTAATGATTCA
CTAATGACTTTATCAGTATTGAAAGGCCCTTGAGAACTACTTTTTCCTAA
ATACATGAAATCTAGTTACGACATTGCTTCAAGTTCTTTAGATGAATTAC
TTTGAAATTTTGATAGTAATTTTTGATAATTGTTCTTTCCTTATCTACAA
TTTATACTTTTTAGTTAATGGAAAGTGGGGATCATGGGGCTCATATGGAT
CATGTAACAATAAATGTGGTGGAGGTGTTCAAGAACGATTCCGTTATTGT
AATAATCCCGCCCCCGCCCATGGTGGTAGTGGTTGCCCTGGATACGCCAA
AATGGTCAGAGCTTGCAATACACACAAGTGCCCAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044267-exon-sc0005268-1575043694:4281..4343 | TCONS_00044267-exon-sc0005268-1575043694:4281..4343 | Clytia hemisphaerica | exon |
| TCONS_00044267-exon-sc0005268-1575043694:3107..3289 | TCONS_00044267-exon-sc0005268-1575043694:3107..3289 | Clytia hemisphaerica | exon |
| TCONS_00044267-exon-sc0005268-1575043694:106..279 | TCONS_00044267-exon-sc0005268-1575043694:106..279 | Clytia hemisphaerica | exon |
| TCONS_00044267-exon-sc0005268-1510915933:4281..4343 | TCONS_00044267-exon-sc0005268-1510915933:4281..4343 | Clytia hemisphaerica | exon |
| TCONS_00044267-exon-sc0005268-1510915933:3107..3289 | TCONS_00044267-exon-sc0005268-1510915933:3107..3289 | Clytia hemisphaerica | exon |
| TCONS_00044267-exon-sc0005268-1510915933:106..279 | TCONS_00044267-exon-sc0005268-1510915933:106..279 | Clytia hemisphaerica | exon |
| TCONS_00044267-exon-sc0005268-1491911889:4281..4343 | TCONS_00044267-exon-sc0005268-1491911889:4281..4343 | Clytia hemisphaerica | exon |
| TCONS_00044267-exon-sc0005268-1491911889:3107..3289 | TCONS_00044267-exon-sc0005268-1491911889:3107..3289 | Clytia hemisphaerica | exon |
| TCONS_00044267-exon-sc0005268-1491911889:106..279 | TCONS_00044267-exon-sc0005268-1491911889:106..279 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005268 | supercontig | sc0005268:106..4343 - |
Blast
BLAST of TCONS_00044267 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 8.246e-33 Identity = 63/172 (36.63%), Postives = 87/172 (50.58%), Query Frame = 3
Query: 3 VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHAHSX---------------------------------YRSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGKWGSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCPG 419
++G W W +++C+ CGGG + R R C++P P +GG+ C GS S YR+C+NP P++GG++C G + Q CNT CPV+G WGSW S+ C+ CGGG + R R C++P P GG CPG V CN CPG
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870 HSP 2 Score: 116.701 bits (291), Expect = 4.954e-30 Identity = 62/171 (36.26%), Postives = 83/171 (48.54%), Query Frame = 3
Query: 3 VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHA---------------------------------HSXYRSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGKWGSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCP 416
V+G + +W + +C+ CG G+Q R R CN P PA+GGK C GS + R+CNNP+ HGG+ C G+ CN + CPV+G W +W +G+C+ CG G Q R R CNNP PA GGS C G ++ CN CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP 4698 HSP 3 Score: 115.546 bits (288), Expect = 1.158e-29 Identity = 60/171 (35.09%), Postives = 82/171 (47.95%), Query Frame = 3
Query: 3 VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHAHSXY---------------------------------RSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGKWGSWGSYGSCNNKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCP 416
V+G W +W + C + CG G QTR R+CNNP+ HGG+ C G+ R CNNP PA GG C G+ Q CN + CP++GKW +W S+ +C+ CGGG ++R R C++P P +GG C G CN+ CP
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755
The following BLAST results are available for this feature:
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