TCONS_00044260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044260
Unique NameTCONS_00044260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044260 ID=TCONS_00044260|Name=TCONS_00044260|organism=Clytia hemisphaerica|type=transcript|length=886bp
ATTTTGTTTTGAACGGCAGTTAGTCAAAATCAATAATTAAGCTGTGGTTT
TCCTCACtaagataaaaacattatttaaagacaaacaatacggccatttt
gtttttgcaaCAAAGGCGCGAACTTTAAATCGACGATTATCATGGTTTTC
GATTTAAGCGTTAAATCCATAGATATAGTTGATATAGTAATCAAGTATAC
GGAACTTGGATGTTCCCGTTATACATTTATTATGCGGGTAAAAAGTAATC
CGGATGATTTAACATTTATCGTACACCACCTCTAAAAAATACCAATACAG
AAAGAAAGtattattttgttattattcCTGGTTTTGTGAATGTAGTTTTT
GGTTTTAAATAATCTCGTCATGGCAAGCAATGATACTGAACAACAGTGCT
CCTCAAAGTCAAGCGAACCCAAAAAGACAAGTAAGTAGTTCGATACTAAT
AAAACCCTTAAAATACTCTGGCCATCCCCCTTCTTGGTATATCCCCTAca
gtgagattgggtaacttacATCAAGtgaaggctaacatgcatagccctca
aatgaatgacctggctggtcattaaaataaactatattcagctTCGCTCA
CAGCACTActgtaccatttttgttttgatttaactttgtattttaatccc
cccttttccaggaaaatttcTGAGAGAGCCAGAAGGCACCTTGCACAGAC
TTCTGTGCTGACAATTTCATTGGTTtggaaatcttgaaaaattaattatc
tGACGTAATGACATTTGGGAATTTGTTTTCACGcaaaaaagttttgagat
tGAATATAGAATAATATGTTTTCAACAAATAAATTTGTAAGTGTTTAGTA
AGTGTCTCACTTCATAACATTGTAAAAGAAGGGTGT
Run BLAST on NCBI

transcript from alignment at sc0005259:75..960

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044260 ID=TCONS_00044260|Name=TCONS_00044260|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at sc0005259:75..960 (Clytia hemisphaerica)
ACACCCTTCTTTTACAATGTTATGAAGTGAGACACTTACTAAACACTTAC
AAATTTATTTGTTGAAAACATATTATTCTATATTCaatctcaaaactttt
ttgCGTGAAAACAAATTCCCAAATGTCATTACGTCagataattaattttt
caagatttccaAACCAATGAAATTGTCAGCACAGAAGTCTGTGCAAGGTG
CCTTCTGGCTCTCTCAgaaattttcctggaaaaggggggattaaaataca
aagttaaatcaaaacaaaaatggtacagTAGTGCTGTGAGCGAagctgaa
tatagtttattttaatgaccagccaggtcattcatttgagggctatgcat
gttagccttcaCTTGATgtaagttacccaatctcactgTAGGGGATATAC
CAAGAAGGGGGATGGCCAGAGTATTTTAAGGGTTTTATTAGTATCGAACT
ACTTACTTGTCTTTTTGGGTTCGCTTGACTTTGAGGAGCACTGTTGTTCA
GTATCATTGCTTGCCATGACGAGATTATTTAAAACCAAAAACTACATTCA
CAAAACCAGgaataataacaaaataataCTTTCTTTCTGTATTGGTATTT
TTTAGAGGTGGTGTACGATAAATGTTAAATCATCCGGATTACTTTTTACC
CGCATAATAAATGTATAACGGGAACATCCAAGTTCCGTATACTTGATTAC
TATATCAACTATATCTATGGATTTAACGCTTAAATCGAAAACCATGATAA
TCGTCGATTTAAAGTTCGCGCCTTTGttgcaaaaacaaaatggccgtatt
gtttgtctttaaataatgtttttatcttaGTGAGGAAAACCACAGCTTAA
TTATTGATTTTGACTAACTGCCGTTCAAAACAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027898XLOC_027898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044260-exon-sc0005259-1491911889:75..960TCONS_00044260-exon-sc0005259-1491911889:75..960Clytia hemisphaericaexon
TCONS_00044260-exon-sc0005259-1510915933:75..960TCONS_00044260-exon-sc0005259-1510915933:75..960Clytia hemisphaericaexon
TCONS_00044260-exon-sc0005259-1575043694:75..960TCONS_00044260-exon-sc0005259-1575043694:75..960Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005259supercontigsc0005259:75..960 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.406207	0.537909	0.74503	0.663576	0.521802	0.620646	0.881811	0.841455	0.885718	0.604472	0.816057	0.822355	1.10754	0.529243	0.897553	0.802055	1.1314	0.850834	0.781811	0.940365	1.03414	1.08384	0.510985	0.645461	1.77758	1.44865	1.55924	0.994199	0.583632	0.775101
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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