TCONS_00044258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044258
Unique NameTCONS_00044258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044258 ID=TCONS_00044258|Name=TCONS_00044258|organism=Clytia hemisphaerica|type=transcript|length=393bp
aaaattataaaaaatattcaacaataGCAGCCTATTGAAAGTGGGGATTA
GTGTGGAATTTTGGCTATTGTGTAGACTGTGCAAACAAActttacaaagg
attttcccTCTCGAAagttggggggggggttttgaaaaaagggaaaaata
tcGAATTAAAGCAGATTAAAGAACTTCCGTTTTGCCTTTTGCAATAAAAT
TAatctgataaaatttttacattctTTCGTGTAATTTTACGgcagaattt
acaaaaattaactgatggcaaatttggaaaaactctgagattttccattt
ttgaatatttttacgtGTATCTAGAACAAGAATTTACGAATCGTAACAGC
TGCAGAGATATATTCTTCCCCCTTATTCTTAGGTGTAATGGGG
Run BLAST on NCBI

transcript from alignment at sc0005257:3050..3442

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044258 ID=TCONS_00044258|Name=TCONS_00044258|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at sc0005257:3050..3442 (Clytia hemisphaerica)
CCCCATTACACCTAAGAATAAGGGGGAAGAATATATCTCTGCAGCTGTTA
CGATTCGTAAATTCTTGTTCTAGATACacgtaaaaatattcaaaaatgga
aaatctcagagtttttccaaatttgccatcagttaatttttgtaaattct
gcCGTAAAATTACACGAAagaatgtaaaaattttatcagatTAATTTTAT
TGCAAAAGGCAAAACGGAAGTTCTTTAATCTGCTTTAATTCgatattttt
cccttttttcaaaaccccccccccaactTTCGAGAgggaaaatcctttgt
aaagTTTGTTTGCACAGTCTACACAATAGCCAAAATTCCACACTAATCCC
CACTTTCAATAGGCTGCtattgttgaatattttttataatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027896XLOC_027896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044258-exon-sc0005257-1491911889:3050..3442TCONS_00044258-exon-sc0005257-1491911889:3050..3442Clytia hemisphaericaexon
TCONS_00044258-exon-sc0005257-1510915933:3050..3442TCONS_00044258-exon-sc0005257-1510915933:3050..3442Clytia hemisphaericaexon
TCONS_00044258-exon-sc0005257-1575043694:3050..3442TCONS_00044258-exon-sc0005257-1575043694:3050..3442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005257supercontigsc0005257:3050..3442 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.771255	0.752095	0.218314	0.213586	1.3001	0.616414	2.72682	0.928296	0.649922	0.805033	0.781385	1.54096	0.641172	0.399518	0.218972	0.939962	0.723723	0.445076	1.02483	0.857926	0.932117	1.09117	0.221077	0.401981	0.828063	1.47805	0.793158	0	0.642025	0.872162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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