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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044249 ID=TCONS_00044249|Name=TCONS_00044249|organism=Clytia hemisphaerica|type=transcript|length=959bp
TGGGATAAAAGAATGTATCTCACATTTCCTCACACGAGATGATATATGAT
ATGATGACTGGATCAATCACACAGCTAGTTTCAAGGATTCCAGATTCAAG
AAaattatttgattttgtttattGCGCACAATATAGTACAAATTGTGGTA
TGTGTGTCCAAGGTCTATGGTTTATGGTGAAAAATTGGCTGGTCTCACTT
TCCTAGAAATGGTCACCTAACCatatcgtcgcatcaaaataaaaaagctt
taagtccatttttgttgttttgagaaaatcgacTTTAAATTATCATTCCT
TAAATCGTGAAAAACCAttaacatttgaaatatttttgtgttagAAAAGC
CATTAGTTCAAAATTGTTTCCACTCTGGACTAAACTGATGTgaattaagg
cttttttaccctgaaaataaagtgaaaagtaaaattcttatttttataag
aGCTAGCTTTAAATTGGGCCACTTTTGGTTGGTTTTTGTTggatttgagc
caaaaaatcgataaaaacggGGTGGAAAGCATCGTTATGGTCATAActca
atcttccaagaaatggacttaaagcttttttattttgatgcgacgatatA
TGGCTTACAgttaagtgaaaatttgaatCACTACCACATGAGATTAATTT
ATTTCTATACATaagaattttgttgttttttgtatcaatatttttaaaga
ggtccgcaaaaaaattataaggaaaaagtaaaagattaattttaattaat
ttttggttaaattattttttgcaatTATATCTTattggattttatttttt
tgggtaattattttctctctttttttattattcttaGATTTTTTCTATTC
GTTCACGTGACTTTTTTGCCTTTATTGTCCATTGCTTTCTTACAGGGAGC
TTAAAAACAATAAGTTACCCGcttgttttttcataagaaccagtaaattt
tgccTGAGC Run BLAST on NCBI transcript from alignment at sc0005249:1850..3560- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044249 ID=TCONS_00044249|Name=TCONS_00044249|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at sc0005249:1850..3560- (Clytia hemisphaerica)
TGGGATAAAAGAATGTATCTCACATTTCCTCACACGAGATGATGTAAGTG
CAAAAACTTGAACTAAAATCTAAGTTTACATATTGTGCTGAAATAACAAA
TTCATACAAATCCTTCCCTATCCACAATCCTTATCCAGAGGATCTGGTTC
TGGCTCGTTCCTGTTAAAACTGTCGGCGAGATAACCAGATTACACCTATA
CATCCATTCTCGTAACGTTATGAAGTTACACACTTAACTATTTACCTTTT
GTTGAAAAAATGTGTCTAAATCAGAAAGATCGAGCAAACGGGTTTTCGTC
GACAGGTTTTCCAGGCTAACTTCATGGAAAAGTTTACCTGGTTCTCATTA
CCTGGGTTAGGCTCACATTCTTGAAGTCATTGGATTGGTTTGTTTTCTTT
CAGGTATTTATGATATGCACCATTACAATGTCTTCTAACATTACATCACG
GACCCAATAGCGTATTGGTTGCAAGTGACTTAGTGACTTATTGATTTTAT
ACGTCACTTACAACCAATCAGCTGTTGGGTCTATGGTGTGATGTTGAAGA
CATTGCAGTGATGCATATCATGAATGAAATGAAATAAACTTGAATCTAGT
TCTCTTGTACTCTAGAGTCAGGGTTGATACACCTCAAATTTAAGGGGATT
AATTTTAATGATGAAAAAGTAAACTGGGAAATTCTACATTTTTTGTAGAA
AGGTGTAGAGCCAGCGTCGAAGTTGCAAGAATTTTACTAATTGTGAAAGG
TGAGAATTTACTCTAAAACAATCTTTTTTGCTTTCATTTCTCCAGATATG
ATATGATGACTGGATCAATCACACAGCTAGTTTCAAGGATTCCAGATTCA
AGAAAATTATTTGATTTTGTTTATTGCGCACAATATAGTACAAATTGTGG
TATGTGTGTCCAAGGTCTATGGTTTATGGTGAAAAATTGGCTGGTCTCAC
TTTCCTAGAAATGGTCACCTAACCATATCGTCGCATCAAAATAAAAAAGC
TTTAAGTCCATTTTTGTTGTTTTGAGAAAATCGACTTTAAATTATCATTC
CTTAAATCGTGAAAAACCATTAACATTTGAAATATTTTTGTGTTAGAAAA
GCCATTAGTTCAAAATTGTTTCCACTCTGGACTAAACTGATGTGAATTAA
GGCTTTTTTACCCTGAAAATAAAGTGAAAAGTAAAATTCTTATTTTTATA
AGAGCTAGCTTTAAATTGGGCCACTTTTGGTTGGTTTTTGTTGGATTTGA
GCCAAAAAATCGATAAAAACGGGGTGGAAAGCATCGTTATGGTCATAACT
CAATCTTCCAAGAAATGGACTTAAAGCTTTTTTATTTTGATGCGACGATA
TATGGCTTACAGTTAAGTGAAAATTTGAATCACTACCACATGAGATTAAT
TTATTTCTATACATAAGAATTTTGTTGTTTTTTGTATCAATATTTTTAAA
GAGGTCCGCAAAAAAATTATAAGGAAAAAGTAAAAGATTAATTTTAATTA
ATTTTTGGTTAAATTATTTTTTGCAATTATATCTTATTGGATTTTATTTT
TTTGGGTAATTATTTTCTCTCTTTTTTTATTATTCTTAGATTTTTTCTAT
TCGTTCACGTGACTTTTTTGCCTTTATTGTCCATTGCTTTCTTACAGGGA
GCTTAAAAACAATAAGTTACCCGCTTGTTTTTTCATAAGAACCAGTAAAT
TTTGCCTGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044249-exon-sc0005249-1575043694:3518..3560 | TCONS_00044249-exon-sc0005249-1575043694:3518..3560 | Clytia hemisphaerica | exon |
| TCONS_00044249-exon-sc0005249-1575043694:1850..2765 | TCONS_00044249-exon-sc0005249-1575043694:1850..2765 | Clytia hemisphaerica | exon |
| TCONS_00044249-exon-sc0005249-1510915933:3518..3560 | TCONS_00044249-exon-sc0005249-1510915933:3518..3560 | Clytia hemisphaerica | exon |
| TCONS_00044249-exon-sc0005249-1510915933:1850..2765 | TCONS_00044249-exon-sc0005249-1510915933:1850..2765 | Clytia hemisphaerica | exon |
| TCONS_00044249-exon-sc0005249-1491911889:3518..3560 | TCONS_00044249-exon-sc0005249-1491911889:3518..3560 | Clytia hemisphaerica | exon |
| TCONS_00044249-exon-sc0005249-1491911889:1850..2765 | TCONS_00044249-exon-sc0005249-1491911889:1850..2765 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005249 | supercontig | sc0005249:1850..3560 - |
Blast
The following BLAST results are available for this feature:
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