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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044243 ID=TCONS_00044243|Name=TCONS_00044243|organism=Clytia hemisphaerica|type=transcript|length=1258bp
GAAAAATGGCACATTATCACCCTGCGTCCACAAGACATCACCCCTAGCTT
CCGTCAAGCCACCAGCAACATGCACATCAATGAGATCGTTCATCGGTGCA
TTTAAAGCCCTTGCTCGTTGCATACCACGTTACTCTTCGCTCGTCGCACC
ACTGGAGGATTCCATTAAAGGCATGCAAGGCTAGCAAAAGATACACTGGA
CGGACGAACTGAGGACTCAATTCTTTCGATGCCAAGAGGCTGTCAACTCA
CCCAAAACGATCACCATACCTCGACCCGACGATAAGCTTACATTGACAAC
AGACGCTTCTCCAGTCAACCAAGGTTTAGCCGCTACACTCTTCCTCGATC
GTGATGGCAAACGTCATATCGGCGGATTCTTCAGTTTTAAACTAAAGTCA
CACCAAATCGGGTGGTGGCCCTGTGAACATGAAGCCCTTGCCATATCATC
CGCTGTTCATCACTTTGCTCCATACATACGAGACTCTCACCACTCTACTC
AAGTGCTGACCGACAACGAACCGTGCGTTGAAGCCAACCGACGATTACGT
CAAGGAAAGTTTTCCACCTCAAGTCGCGTTTCGACCTTTCTTGCCACACT
CAGCGAATTCAACGTAGAAGTTTGCCACATCAGCGGTTCATCCAACCATT
CGAGCGATTTTGGTTCTCGTAACCCAAACGAATGCCGCGACAAATCGTGC
CAGATTTGCAAGTTCGTACAAGAGACAGTCGATTCAGTGGTTCAGCAAGT
ATCGATCGACGACATCCTTTCAGGATCCGCTAGAATGCCGTTCCTCAACA
ATTCTTCTTGGCACTCTGCGCAACAAGAATGTCCCTCCTTACGTCGTGCA
TTCGCCCATCTACAACAAGGGACACGTCCACCACGGAAGGCGCGACACAT
TCAAGACGTTCGAAAGTACCTACGCGTCGCTACAATCTCCGCCAATAATC
TCCTTGTCGTCAAGAAGAATGATCCTTACGTCCACCAACGACAACTGATC
GTTGTACCCTCCGCCATCCTCCCCGGGCTTATCACCGCCCTCCATATTCA
ACTCAATCACCCAACCCGTAATCAACTCCAAAAGGTCTTCGATCGCCATT
TCTATGCTATAAATAGCATTTCTACAATCGAGTCTGTCACATCAAGTTGC
CACACTTGTCAATCCTTAATGAAACTACCCAACGAAACCTACGAGCAAAC
ATCAACAACCCTGCCACACCACCCAGGAAAGATGTTCTCTGCCGACGTTT
TACGCCGN Run BLAST on NCBI protein sequence of TCONS_00044243-protein >TCONS_00044243-protein ID=TCONS_00044243-protein|Name=TCONS_00044243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MPFLNNSSWHSAQQECPSLRRAFAHLQQGTRPPRKARHIQDVRKYLRVAT
ISANNLLVVKKNDPYVHQRQLIVVPSAILPGLITALHIQLNHPTRNQLQK
VFDRHFYAINSISTIESVTSSCHTCQSLMKLPNETYEQTSTTLPHHPGKM
FSADVLRX Run BLAST on NCBI transcript from alignment at sc0005236:3155..4412 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044243 ID=TCONS_00044243|Name=TCONS_00044243|organism=Clytia hemisphaerica|type=transcript|length=1258bp|location=Sequence derived from alignment at sc0005236:3155..4412 (Clytia hemisphaerica)
NCGGCGTAAAACGTCGGCAGAGAACATCTTTCCTGGGTGGTGTGGCAGGG
TTGTTGATGTTTGCTCGTAGGTTTCGTTGGGTAGTTTCATTAAGGATTGA
CAAGTGTGGCAACTTGATGTGACAGACTCGATTGTAGAAATGCTATTTAT
AGCATAGAAATGGCGATCGAAGACCTTTTGGAGTTGATTACGGGTTGGGT
GATTGAGTTGAATATGGAGGGCGGTGATAAGCCCGGGGAGGATGGCGGAG
GGTACAACGATCAGTTGTCGTTGGTGGACGTAAGGATCATTCTTCTTGAC
GACAAGGAGATTATTGGCGGAGATTGTAGCGACGCGTAGGTACTTTCGAA
CGTCTTGAATGTGTCGCGCCTTCCGTGGTGGACGTGTCCCTTGTTGTAGA
TGGGCGAATGCACGACGTAAGGAGGGACATTCTTGTTGCGCAGAGTGCCA
AGAAGAATTGTTGAGGAACGGCATTCTAGCGGATCCTGAAAGGATGTCGT
CGATCGATACTTGCTGAACCACTGAATCGACTGTCTCTTGTACGAACTTG
CAAATCTGGCACGATTTGTCGCGGCATTCGTTTGGGTTACGAGAACCAAA
ATCGCTCGAATGGTTGGATGAACCGCTGATGTGGCAAACTTCTACGTTGA
ATTCGCTGAGTGTGGCAAGAAAGGTCGAAACGCGACTTGAGGTGGAAAAC
TTTCCTTGACGTAATCGTCGGTTGGCTTCAACGCACGGTTCGTTGTCGGT
CAGCACTTGAGTAGAGTGGTGAGAGTCTCGTATGTATGGAGCAAAGTGAT
GAACAGCGGATGATATGGCAAGGGCTTCATGTTCACAGGGCCACCACCCG
ATTTGGTGTGACTTTAGTTTAAAACTGAAGAATCCGCCGATATGACGTTT
GCCATCACGATCGAGGAAGAGTGTAGCGGCTAAACCTTGGTTGACTGGAG
AAGCGTCTGTTGTCAATGTAAGCTTATCGTCGGGTCGAGGTATGGTGATC
GTTTTGGGTGAGTTGACAGCCTCTTGGCATCGAAAGAATTGAGTCCTCAG
TTCGTCCGTCCAGTGTATCTTTTGCTAGCCTTGCATGCCTTTAATGGAAT
CCTCCAGTGGTGCGACGAGCGAAGAGTAACGTGGTATGCAACGAGCAAGG
GCTTTAAATGCACCGATGAACGATCTCATTGATGTGCATGTTGCTGGTGG
CTTGACGGAAGCTAGGGGTGATGTCTTGTGGACGCAGGGTGATAATGTGC
CATTTTTC Coding sequence (CDS) from alignment at sc0005236:3155..4412 >TCONS_00044243 ID=TCONS_00044243|Name=TCONS_00044243|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0005236:3155..4412 (Clytia hemisphaerica)
NCGGCGTAAAACGTCGGCAGAGAACATCTTTCCTGGGTGGTGTGGCAGGG
TTGTTGATGTTTGCTCGTAGGTTTCGTTGGGTAGTTTCATTAAGGATTGA
CAAGTGTGGCAACTTGATGTGACAGACTCGATTGTAGAAATGCTATTTAT
AGCATAGAAATGGCGATCGAAGACCTTTTGGAGTTGATTACGGGTTGGGT
GATTGAGTTGAATATGGAGGGCGGTGATAAGCCCGGGGAGGATGGCGGAG
GGTACAACGATCAGTTGTCGTTGGTGGACGTAAGGATCATTCTTCTTGAC
GACAAGGAGATTATTGGCGGAGATTGTAGCGACGCGTAGGTACTTTCGAA
CGTCTTGAATGTGTCGCGCCTTCCGTGGTGGACGTGTCCCTTGTTGTAGA
TGGGCGAATGCACGACGTAAGGAGGGACATTCTTGTTGCGCAGAGTGCCA
AGAAGAATTGTTGAGGAACGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044243-exon-sc0005236-1491911889:3155..4412 | TCONS_00044243-exon-sc0005236-1491911889:3155..4412 | Clytia hemisphaerica | exon |
| TCONS_00044243-exon-sc0005236-1510915933:3155..4412 | TCONS_00044243-exon-sc0005236-1510915933:3155..4412 | Clytia hemisphaerica | exon |
| TCONS_00044243-exon-sc0005236-1575043694:3155..4412 | TCONS_00044243-exon-sc0005236-1575043694:3155..4412 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005236 | supercontig | sc0005236:3155..4412 . |
Blast
The following BLAST results are available for this feature:
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