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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044231 ID=TCONS_00044231|Name=TCONS_00044231|organism=Clytia hemisphaerica|type=transcript|length=1629bp
AAGAGAGATATCGTTTACTCAGTAAGAAAAAAAACTgagtagaaaaaaaa
ttgagaaagacATTCTTAGTAGCTGACGACAGATAGATAACGAGCTCCTA
TCATGAGTTGAAACCCGCCTATAAAAACCGAACCCTTATAACTTGTTAAC
CAAACAGATAAGAGTCGAAAAACAttcggtcggtcggttggtCTTTAAAC
ACTAAATGCATTCATTCAGAACAAGTGTTTAAACCACCTTCAAACTTGGA
TTATTTACTTATAAAACTTTTGGATTTGTCACATTTTAAACACACTTGTA
CAACACTTGACGATGGGTCTGATGAGAAAATGGAGTTCAAAGAAACGCAC
TTCTACCGCTGCACAAGAACGTTTCCAAACAGCTCTGGCGAACGAGAACA
TCACACTGGTGCAGAATTTACTAATCAATAACCGCCACGAGATCGACTTG
GAAGCGTATAACAGGCAAGGTGTGACCGCTCTTCATTTATGCACTCTTGC
CAATAATACGACCATGTTACGTGTTTTAATTAGCTTTGACGCCAATATTA
ATGCTACCGACAAGCATGGTTGGACTAGCCTGCACGCTGCAGCCGCTCTT
GGTTATGAGGAGACCATTAAAGTACTTTTGAAGGCTGGAGTTGACCCGAA
GGTGCGATCAACAACAGGTCAATCTGCCATTGATGTTGCGTTGACTGAAG
AGATTAGATACATGATGAGGAAATATGCAAAGAAATGCAACAAGGCGAAG
CGAGAGCAGAGTCTTTGTTCAGGCTCCTCCAACACTTCGAGGGGATCTAG
TTGTGCGAGCGTTAATCATTACTCCGACTGAGAGGTTGATTTTATTGGCC
TTACGTGGTACATTTTTTGATGTCAGAATTGGGTAGAAAAGCTGTCGTCA
CTTTTGTTTCTTCATTACTGGACTGGTAACAGACGAGCAAAACATCATGA
TGCTTCGTAATCTTCCTTAGATTTTGGTAGAAAAATTCCACAtcgttttt
gcttaaagacgTTTGAAGATCTTTGACCATTTTGACACTAACACCAAGGA
CATCTGCGCATGCACCTCCTTTGCGGAGTTACAGCCAAGAGCATCTTTTG
ATTGGCTGAAAGTACTGAAATCAGATGATATACGCGTAGTGATACTCTAC
CTAGCATATGCATTTACCTTTTATCGTTTTCGTGTTGATACCAgcttata
ccttatcggccctttttacgctggccctaatttaacgccggcccttatta
cgccacgagccgaaaaataacgccaataagggccggcgtaaaaagggccg
ataaggtagacAACTAGTATGAGAGGGTTTAATAAAGACGTTGAAATACG
TTCATTTCAGTATCAATCAACCAAGCCATTTTAAGCGATAAATTCATACT
CAAAGGAGTTCGTCTTGCGAACTGATATTTTTTAACATGTGATTTATGAT
GTTGATTAAATAAGTTTAGGATATATTGTTATAGAAtttcgaaaatatat
tttagataggtatattatatttttttgtgtaaaaaaattGCAAACTAATG
CAAAATGACATTTTATAAATATGATATTGTATACAGCAACATCAAGCAAG
AATACACGCTTTAATGGATTCGTCGCAAA Run BLAST on NCBI protein sequence of TCONS_00044231-protein >TCONS_00044231-protein ID=TCONS_00044231-protein|Name=TCONS_00044231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MGLMRKWSSKKRTSTAAQERFQTALANENITLVQNLLINNRHEIDLEAYN
RQGVTALHLCTLANNTTMLRVLISFDANINATDKHGWTSLHAAAALGYEE
TIKVLLKAGVDPKVRSTTGQSAIDVALTEEIRYMMRKYAKKCNKAKREQS
LCSGSSNTSRGSSCASVNHYSD Run BLAST on NCBI transcript from alignment at sc0005205:665..2956+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044231 ID=TCONS_00044231|Name=TCONS_00044231|organism=Clytia hemisphaerica|type=transcript|length=2292bp|location=Sequence derived from alignment at sc0005205:665..2956+ (Clytia hemisphaerica)
AAGAGAGATATCGTTTACTCAGTAAGAAAAAAAACTgagtagaaaaaaaa
ttgagaaagacATTCTTAGTAGCTGACGACAGATAGATAACGAGCTCCTA
TCATGAGTTGAAACCCGCCTATAAAAACCGAACCCTTATAACTTGTTAAC
CAAACAGATAAGAGTCGAAAAACAttcggtcggtcggttggtCTTTAAAC
ACTAAATGCATTCATTCAGAACAAGTGTTTAAACCACCTTCAAACTTGGA
TTATTTACTTATAAAACTTTTGGATTTGTCACATTTTAAACACACTTGTA
CAACACTTGACGATGGGTCTGATGAGAAAATGGAGTTCAAAGAAACGCAC
TTCTACCGCTGCACAAGAACGTTTCCAAACAGCTCTGGCGAACGAGAACA
TCACACTGGTGCAGAATTTACTAATCAATAACCGCCACGAGATCGACTTG
GAAGCGTATAACAGGCAAGGTGTGACCGCTCTTCATTTATGCACTCTTGC
CAATAATACGACCATGTTACGTGTTTTAATTAGCTTTGACGCCAATATTA
ATGCTACCGACAAGCATGGTTGGACTAGCCTGCACGCTGCAGCCGCTCTT
GGTTATGAGGAGACCATTAAAGTACTTTTGAAGGCTGGAGTTGACCCGAA
GGTGCGATCAACAACAGGTCAATCTGCCATTGATGTTGCGTTGACTGAAG
AGATTAGATACATGATGAGGAAATATGCAAAGAAATGCAACAAGGCGAAG
CGAGAGCAGAGTCTTTGTTCAGGCTCCTCCAACACTTCGAGGGGATCTAG
TTGTGCGAGCGTTAATCATTACTCCGACTGAGAGGTTGGTTTTATTGGCC
TTACTCGGTACACTTTTTGATGTCAGAATTCGGTAGAAAAGCTGTCGCCA
CTTTTGTTTCTTCATTACTGGAAAAAACTGAGAAACATCATGGAGCTTGC
AATCTTCCTTAGATTTTGGTAGAAAAATTCCACATCATTATTGCTTAAAG
ACGTTTGGAAGATCTATGATAATTATGACACTACCGCCAATGACATCTAC
GCATGCATTCCACAAGCGGTTCCAACCTTCATATTATTCTTATCTCTAAA
ACaaggtgtcgaaattagaagagggctGTCGACATTAAACCAATTTCCAG
TACTCTACCTAGCATATGTATTTACCTTTTATCGTTTTCGTGTTGATCTT
ATACATATAAAAAGATGCCAGCCTATAGACAACTAGTATCAGTAGCGTGG
TTGCAGGAAGGGGCAGACCCCCAGCGGCCGATTTTTTCAGGGGGCGCCGA
AATACAAAGGGCGAAAAAAGACGTCTCTTattactaatttcggcgccctt
tgcttttttacaccttagaaTTGGCAGTTTTCCACCAAAAGGAGAGAAAA
TATCCAGAAATTTTCGTACTCGCTTCCCTCGcgtaattttttaaaagata
tttactttttgtNTTGTGCGAGCGTTAATCGTTACTCCGACTGAGAGGTT
GATTTTATTGGCCTTACGTGGTACATTTTTTGATGTCAGAATTGGGTAGA
AAAGCTGTCGTCACTTTTGTTTCTTCATTACTGGACTGGTAACAGACGAG
CAAAACATCATGATGCTTCGTAATCTTCCTTAGATTTTGGTAGAAAAATT
CCACAtcgtttttgcttaaagacgTTTGAAGATCTTTGACCATTTTGACA
CTAACACCAAGGACATCTGCGCATGCACCTCCTTTGCGGAGTTACAGCCA
AGAGCATCTTTTGATTGGCTGAAAGTACTGAAATCAGATGATATACGCGT
AGTGATACTCTACCTAGCATATGCATTTACCTTTTATCGTTTTCGTGTTG
ATACCAgcttataccttatcggccctttttacgctggccctaatttaacg
ccggcccttattacgccacgagccgaaaaataacgccaataagggccggc
gtaaaaagggccgataaggtagacAACTAGTATGAGAGGGTTTAATAAAG
ACGTTGAAATACGTTCATTTCAGTATCAATCAACCAAGCCATTTTAAGCG
ATAAATTCATACTCAAAGGAGTTCGTCTTGCGAACTGATATTTTTTAACA
TGTGATTTATGATGTTGATTAAATAAGTTTAGGATATATTGTTATAGAAt
ttcgaaaatatattttagataggtatattatatttttttgtgtaaaaaaa
ttGCAAACTAATGCAAAATGACATTTTATAAATATGATATTGTATACAGC
AACATCAAGCAAGAATACACGCTTTAATGGATTCGTCGCAAA Coding sequence (CDS) from alignment at sc0005205:665..2956+ >TCONS_00044231 ID=TCONS_00044231|Name=TCONS_00044231|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0005205:665..2956+ (Clytia hemisphaerica)
ATGGGTCTGATGAGAAAATGGAGTTCAAAGAAACGCACTTCTACCGCTGC
ACAAGAACGTTTCCAAACAGCTCTGGCGAACGAGAACATCACACTGGTGC
AGAATTTACTAATCAATAACCGCCACGAGATCGACTTGGAAGCGTATAAC
AGGCAAGGTGTGACCGCTCTTCATTTATGCACTCTTGCCAATAATACGAC
CATGTTACGTGTTTTAATTAGCTTTGACGCCAATATTAATGCTACCGACA
AGCATGGTTGGACTAGCCTGCACGCTGCAGCCGCTCTTGGTTATGAGGAG
ACCATTAAAGTACTTTTGAAGGCTGGAGTTGACCCGAAGGTGCGATCAAC
AACAGGTCAATCTGCCATTGATGTTGCGTTGACTGAAGAGATTAGATACA
TGATGAGGAAATATGCAAAGAAATGCAACAAGGCGAAGCGAGAGCAGAGT
CTTTGTTCAGGCTCCTCCAACACTTCGAGGGGATCTAGTTGTGCGAGCGT
TAATCATTACTCCGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044231-exon-sc0005205-1491911889:665..1498 | TCONS_00044231-exon-sc0005205-1491911889:665..1498 | Clytia hemisphaerica | exon |
| TCONS_00044231-exon-sc0005205-1510915933:665..1498 | TCONS_00044231-exon-sc0005205-1510915933:665..1498 | Clytia hemisphaerica | exon |
| TCONS_00044231-exon-sc0005205-1575043694:665..1498 | TCONS_00044231-exon-sc0005205-1575043694:665..1498 | Clytia hemisphaerica | exon |
| TCONS_00044231-exon-sc0005205-1491911889:2162..2956 | TCONS_00044231-exon-sc0005205-1491911889:2162..2956 | Clytia hemisphaerica | exon |
| TCONS_00044231-exon-sc0005205-1510915933:2162..2956 | TCONS_00044231-exon-sc0005205-1510915933:2162..2956 | Clytia hemisphaerica | exon |
| TCONS_00044231-exon-sc0005205-1575043694:2162..2956 | TCONS_00044231-exon-sc0005205-1575043694:2162..2956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005205 | supercontig | sc0005205:665..2956 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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