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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044230 ID=TCONS_00044230|Name=TCONS_00044230|organism=Clytia hemisphaerica|type=transcript|length=1849bp
CAAAGACATATTTTGATTGCTGATAGAGAAAAACACGGTTGGAACGTTAT
AAGACATTATAGATCCGACGCACTTGCTGTCGATGAAGATGATGAAAAAA
GGTTGGCAAGGTCTAGAAGGCAGGCCGATGTAGAAAGGAAAGGCAAGGAa
caatcaaaaaagaaattttctactCAAAATATACCTATGAAAAGAGATAA
CTCTAGAGACTACAGATCAGATCGTCCTTATTACAGAGACAGGCTTTTCA
ATACTTACAGTAcgaaaaatttttctaattttaataGGGCATGCTTTATA
TGTGGGAAGCAAGACCACCTACAGTACACTTGCCCAGACAGACACGGAAA
GTGAGAACACTAACTTTGAGGTTTGTTCGTCCGAGCTTAGCGACAAAATT
TGTGTAGTTGGGAGATTGAAAAAACATTCTGATTTTTGGAGAAATACATT
AAAAGCTCCATCTTTTGTACAAAACATTATCGATTTCGGTTACGTAATAC
CTTTTAACGAATTCCCAAAAGAGTTTTGCGAAAAGTACAATGCAAGCAGC
TTAAAACACAAAGACTTTGTAGACGAGgcaattttgaaacttttgaaaaa
caaatgTATTTCAGAACTCAAAAACGTGCCNTAATACCTTTTAACGAATT
CCCAAAAGAGTTTTGCGAAAAGAACAATGCAAGCAGTTTAAAACACAAAG
ACTTTGTAGACGAGgcaattttgaaacttttgaaaaacaaatgTATTTCA
GAACTCAAAAACgtgccaaaattttgcaatccTCTTACTGTGGCAGAAAA
TAAAGGAAAACTGAGGCTAGTAATCGACTTGAGGAACATAAACGATCACG
TCGTAAAACACAAATTTCAATACGAAGACTTGCACACACTTTCAGAAACT
ATGAACAAAAACGATTTCTTTACTACCTTCGACCTAAAAACAGGTTATTA
TCACATCGGCATTCGCCCtgaacaacaaaaatttctagGCTTTCAATGGA
CATTTAAAGACAATTCAACAAGATATTTTCAATTCGTAGTACTCCCAATG
GGATTGTCAACAGCATGCTATGTTTTTACGAAAGTTCTTAGACCATTCGT
GAGCAAATGGCGAGGTCAAGGTATCAAAGCTATAATCTATCTAGACGATG
GCATACTGAGCGGGAAATCACAAGAGGAAACCAGCGAGGCTTCAGATATT
GCCAGAAGAGATATAGAGAACAGTGGCTTAGTTTTGAACTTAGAAAAATC
CGATTTTAACCCGCGGCAAGAAGGTCAATGGTTAGGCACCGTGATCAAca
caaaagtaatgaaattttttgtacCTAAAAACAAAGTTAACAGTTTACTA
CAAAGGATAAATACGGCTCTTTCGCAAGCTTTGGTCTGCGCCAAACAACT
ATCATATATCGCAGGACACCTTTCTTCAATGCACGCCGCAATAGGACCAA
GCACGCGAATGTTTACTAGAGGGATCTACCGCGACATCGAGAGCAGAATT
TCATGGTATAATTTTTTCGAGCCTTCCACAGACACAAAAAGcgaacttaa
attttggtcaaaaaatcttaaaaaccaCGATGGTTATTCTATGAAACACA
GCCCAGCTCATACAAAGGTGATTTTTTCAGACGCAAGCGACTCAGGCTTT
GGAGGTTTTGTATGCGAAAGATTGAACAGAAAGGTTTGCGCAGGGAGTTT
TTCGTCTTTAGAGTCATCATCAAGCTCAACTTACAGAGAACTCTTAGCAA
TAAAATATGTGCTTCAAAGTTTTTCACGATTCTTGACAGGAGAAACAATA
CAGATTAACACAGACAATCAAAACGCTTCAAGAATTTTAACTATAGGAA Run BLAST on NCBI protein sequence of TCONS_00044230-protein >TCONS_00044230-protein ID=TCONS_00044230-protein|Name=TCONS_00044230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MYFRTQKRAXIPFNEFPKEFCEKNNASSLKHKDFVDEAILKLLKNKCISE
LKNVPKFCNPLTVAENKGKLRLVIDLRNINDHVVKHKFQYEDLHTLSETM
NKNDFFTTFDLKTGYYHIGIRPEQQKFLGFQWTFKDNSTRYFQFVVLPMG
LSTACYVFTKVLRPFVSKWRGQGIKAIIYLDDGILSGKSQEETSEASDIA
RRDIENSGLVLNLEKSDFNPRQEGQWLGTVINTKVMKFFVPKNKVNSLLQ
RINTALSQALVCAKQLSYIAGHLSSMHAAIGPSTRMFTRGIYRDIESRIS
WYNFFEPSTDTKSELKFWSKNLKNHDGYSMKHSPAHTKVIFSDASDSGFG
GFVCERLNRKVCAGSFSSLESSSSSTYRELLAIKYVLQSFSRFLTGETIQ
INTDNQNASRILTIG Run BLAST on NCBI transcript from alignment at sc0005201:2256..4104 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044230 ID=TCONS_00044230|Name=TCONS_00044230|organism=Clytia hemisphaerica|type=transcript|length=1849bp|location=Sequence derived from alignment at sc0005201:2256..4104 (Clytia hemisphaerica)
TTCCTATAGTTAAAATTCTTGAAGCGTTTTGATTGTCTGTGTTAATCTGT
ATTGTTTCTCCTGTCAAGAATCGTGAAAAACTTTGAAGCACATATTTTAT
TGCTAAGAGTTCTCTGTAAGTTGAGCTTGATGATGACTCTAAAGACGAAA
AACTCCCTGCGCAAACCTTTCTGTTCAATCTTTCGCATACAAAACCTCCA
AAGCCTGAGTCGCTTGCGTCTGAAAAAATCACCTTTGTATGAGCTGGGCT
GTGTTTCATAGAATAACCATCGtggtttttaagattttttgaccaaaatt
taagttcgCTTTTTGTGTCTGTGGAAGGCTCGAAAAAATTATACCATGAA
ATTCTGCTCTCGATGTCGCGGTAGATCCCTCTAGTAAACATTCGCGTGCT
TGGTCCTATTGCGGCGTGCATTGAAGAAAGGTGTCCTGCGATATATGATA
GTTGTTTGGCGCAGACCAAAGCTTGCGAAAGAGCCGTATTTATCCTTTGT
AGTAAACTGTTAACTTTGTTTTTAGgtacaaaaaatttcattacttttgt
gTTGATCACGGTGCCTAACCATTGACCTTCTTGCCGCGGGTTAAAATCGG
ATTTTTCTAAGTTCAAAACTAAGCCACTGTTCTCTATATCTCTTCTGGCA
ATATCTGAAGCCTCGCTGGTTTCCTCTTGTGATTTCCCGCTCAGTATGCC
ATCGTCTAGATAGATTATAGCTTTGATACCTTGACCTCGCCATTTGCTCA
CGAATGGTCTAAGAACTTTCGTAAAAACATAGCATGCTGTTGACAATCCC
ATTGGGAGTACTACGAATTGAAAATATCTTGTTGAATTGTCTTTAAATGT
CCATTGAAAGCctagaaatttttgttgttcaGGGCGAATGCCGATGTGAT
AATAACCTGTTTTTAGGTCGAAGGTAGTAAAGAAATCGTTTTTGTTCATA
GTTTCTGAAAGTGTGTGCAAGTCTTCGTATTGAAATTTGTGTTTTACGAC
GTGATCGTTTATGTTCCTCAAGTCGATTACTAGCCTCAGTTTTCCTTTAT
TTTCTGCCACAGTAAGAggattgcaaaattttggcacGTTTTTGAGTTCT
GAAATAcatttgtttttcaaaagtttcaaaattgcCTCGTCTACAAAGTC
TTTGTGTTTTAAACTGCTTGCATTGTTCTTTTCGCAAAACTCTTTTGGGA
ATTCGTTAAAAGGTATTANGGCACGTTTTTGAGTTCTGAAATAcatttgt
ttttcaaaagtttcaaaattgcCTCGTCTACAAAGTCTTTGTGTTTTAAG
CTGCTTGCATTGTACTTTTCGCAAAACTCTTTTGGGAATTCGTTAAAAGG
TATTACGTAACCGAAATCGATAATGTTTTGTACAAAAGATGGAGCTTTTA
ATGTATTTCTCCAAAAATCAGAATGTTTTTTCAATCTCCCAACTACACAA
ATTTTGTCGCTAAGCTCGGACGAACAAACCTCAAAGTTAGTGTTCTCACT
TTCCGTGTCTGTCTGGGCAAGTGTACTGTAGGTGGTCTTGCTTCCCACAT
ATAAAGCATGCCCtattaaaattagaaaaatttttcgTACTGTAAGTATT
GAAAAGCCTGTCTCTGTAATAAGGACGATCTGATCTGTAGTCTCTAGAGT
TATCTCTTTTCATAGGTATATTTTGagtagaaaatttcttttttgattgt
TCCTTGCCTTTCCTTTCTACATCGGCCTGCCTTCTAGACCTTGCCAACCT
TTTTTCATCATCTTCATCGACAGCAAGTGCGTCGGATCTATAATGTCTTA
TAACGTTCCAACCGTGTTTTTCTCTATCAGCAATCAAAATATGTCTTTG Coding sequence (CDS) from alignment at sc0005201:2256..4104 >TCONS_00044230 ID=TCONS_00044230|Name=TCONS_00044230|organism=Clytia hemisphaerica|type=CDS|length=1245bp|location=Sequence derived from alignment at sc0005201:2256..4104 (Clytia hemisphaerica)
TCCTATAGTTAAAATTCTTGAAGCGTTTTGATTGTCTGTGTTAATCTGTA
TTGTTTCTCCTGTCAAGAATCGTGAAAAACTTTGAAGCACATATTTTATT
GCTAAGAGTTCTCTGTAAGTTGAGCTTGATGATGACTCTAAAGACGAAAA
ACTCCCTGCGCAAACCTTTCTGTTCAATCTTTCGCATACAAAACCTCCAA
AGCCTGAGTCGCTTGCGTCTGAAAAAATCACCTTTGTATGAGCTGGGCTG
TGTTTCATAGAATAACCATCGtggtttttaagattttttgaccaaaattt
aagttcgCTTTTTGTGTCTGTGGAAGGCTCGAAAAAATTATACCATGAAA
TTCTGCTCTCGATGTCGCGGTAGATCCCTCTAGTAAACATTCGCGTGCTT
GGTCCTATTGCGGCGTGCATTGAAGAAAGGTGTCCTGCGATATATGATAG
TTGTTTGGCGCAGACCAAAGCTTGCGAAAGAGCCGTATTTATCCTTTGTA
GTAAACTGTTAACTTTGTTTTTAGgtacaaaaaatttcattacttttgtg
TTGATCACGGTGCCTAACCATTGACCTTCTTGCCGCGGGTTAAAATCGGA
TTTTTCTAAGTTCAAAACTAAGCCACTGTTCTCTATATCTCTTCTGGCAA
TATCTGAAGCCTCGCTGGTTTCCTCTTGTGATTTCCCGCTCAGTATGCCA
TCGTCTAGATAGATTATAGCTTTGATACCTTGACCTCGCCATTTGCTCAC
GAATGGTCTAAGAACTTTCGTAAAAACATAGCATGCTGTTGACAATCCCA
TTGGGAGTACTACGAATTGAAAATATCTTGTTGAATTGTCTTTAAATGTC
CATTGAAAGCctagaaatttttgttgttcaGGGCGAATGCCGATGTGATA
ATAACCTGTTTTTAGGTCGAAGGTAGTAAAGAAATCGTTTTTGTTCATAG
TTTCTGAAAGTGTGTGCAAGTCTTCGTATTGAAATTTGTGTTTTACGACG
TGATCGTTTATGTTCCTCAAGTCGATTACTAGCCTCAGTTTTCCTTTATT
TTCTGCCACAGTAAGAggattgcaaaattttggcacGTTTTTGAGTTCTG
AAATAcatttgtttttcaaaagtttcaaaattgcCTCGTCTACAAAGTCT
TTGTGTTTTAAACTGCTTGCATTGTTCTTTTCGCAAAACTCTTTTGGGAA
TTCGTTAAAAGGTATTANGGCACGTTTTTGAGTTCTGAAATAcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044230-exon-sc0005201-1491911889:2256..4104 | TCONS_00044230-exon-sc0005201-1491911889:2256..4104 | Clytia hemisphaerica | exon |
| TCONS_00044230-exon-sc0005201-1510915933:2256..4104 | TCONS_00044230-exon-sc0005201-1510915933:2256..4104 | Clytia hemisphaerica | exon |
| TCONS_00044230-exon-sc0005201-1575043694:2256..4104 | TCONS_00044230-exon-sc0005201-1575043694:2256..4104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005201 | supercontig | sc0005201:2256..4104 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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