TCONS_00044193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044193
Unique NameTCONS_00044193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044193 ID=TCONS_00044193|Name=TCONS_00044193|organism=Clytia hemisphaerica|type=transcript|length=631bp
GTTGATGAGGTTGACAGTGGTTTAGGTTTGGATTGTTTTTTCAAATCACG
TGGTGAAGGTTGGGTTGCATACGGTGGTGGTGGCGAGTGGTTGTCCAGTG
GTGCCGATATGGGCATTAGGGGTCGGTGTTTTTTTGTAAATGGATCGAAT
CGTGAGGTAAGTTTTGGGGTTGTATTCACAGCATTTGGTTTGGTTATCGG
TTTCTTGTTGGAGCATAATTTTGGTGGAGGTGGGTGGTTTTCAGTATGGG
TGTCAATCTTTGATGGGTTTGTAGATTTTCTTGGAATTTTGAAGTTGTTG
AGCGATGGTGTTGGGACATGTTGGGTTGGTGATTTTTTAAGAGTCACTGG
CGTGTTGTCCTTTTGGGTGTTGGTTGACGTTTTTGTATTTGATTCCGCTT
TTTGGGCTTTCTCAGTATCGGCTGTGTGAAATTGTAATTGGGTTCTTTCT
ACTATTGGGCGTGGTGATATCATTGTTGGCGATACTTGTTCCAGAATGTC
ATCTAGATCTAGAATATTGTTAAATAATGTGTGTTATTATAGTtgatttt
gttagatctgattTGTTGGTTTATTCGATTGGTTTAgtccttttgaattt
tttacttttaatttctcttttttcttagGAG
Run BLAST on NCBI

protein sequence of TCONS_00044193-protein

>TCONS_00044193-protein ID=TCONS_00044193-protein|Name=TCONS_00044193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MISPRPIVERTQLQFHTADTEKAQKAESNTKTSTNTQKDNTPVTLKKSPT
QHVPTPSLNNFKIPRKSTNPSKIDTHTENHPPPPKLCSNKKPITKPNAVN
TTPKLTSRFDPFTKKHRPLMPISAPLDNHSPPPPYATQPSPRDLKKQSKP
KPLSTSS
Run BLAST on NCBI

transcript from alignment at sc0005136:4226..4856

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044193 ID=TCONS_00044193|Name=TCONS_00044193|organism=Clytia hemisphaerica|type=transcript|length=631bp|location=Sequence derived from alignment at sc0005136:4226..4856 (Clytia hemisphaerica)
CTCctaagaaaaaagagaaattaaaagtaaaaaattcaaaaggacTAAAC
CAATCGAATAAACCAACAaatcagatctaacaaaatcaACTATAATAACA
CACATTATTTAACAATATTCTAGATCTAGATGACATTCTGGAACAAGTAT
CGCCAACAATGATATCACCACGCCCAATAGTAGAAAGAACCCAATTACAA
TTTCACACAGCCGATACTGAGAAAGCCCAAAAAGCGGAATCAAATACAAA
AACGTCAACCAACACCCAAAAGGACAACACGCCAGTGACTCTTAAAAAAT
CACCAACCCAACATGTCCCAACACCATCGCTCAACAACTTCAAAATTCCA
AGAAAATCTACAAACCCATCAAAGATTGACACCCATACTGAAAACCACCC
ACCTCCACCAAAATTATGCTCCAACAAGAAACCGATAACCAAACCAAATG
CTGTGAATACAACCCCAAAACTTACCTCACGATTCGATCCATTTACAAAA
AAACACCGACCCCTAATGCCCATATCGGCACCACTGGACAACCACTCGCC
ACCACCACCGTATGCAACCCAACCTTCACCACGTGATTTGAAAAAACAAT
CCAAACCTAAACCACTGTCAACCTCATCAAC

Coding sequence (CDS) from alignment at sc0005136:4226..4856

>TCONS_00044193 ID=TCONS_00044193|Name=TCONS_00044193|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0005136:4226..4856 (Clytia hemisphaerica)
ATGATATCACCACGCCCAATAGTAGAAAGAACCCAATTACAATTTCACAC
AGCCGATACTGAGAAAGCCCAAAAAGCGGAATCAAATACAAAAACGTCAA
CCAACACCCAAAAGGACAACACGCCAGTGACTCTTAAAAAATCACCAACC
CAACATGTCCCAACACCATCGCTCAACAACTTCAAAATTCCAAGAAAATC
TACAAACCCATCAAAGATTGACACCCATACTGAAAACCACCCACCTCCAC
CAAAATTATGCTCCAACAAGAAACCGATAACCAAACCAAATGCTGTGAAT
ACAACCCCAAAACTTACCTCACGATTCGATCCATTTACAAAAAAACACCG
ACCCCTAATGCCCATATCGGCACCACTGGACAACCACTCGCCACCACCAC
CGTATGCAACCCAACCTTCACCACGTGATTTGAAAAAACAATCCAAACCT
AAACCACTGTCAACCTCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027839XLOC_027839Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044193-proteinTCONS_00044193-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044193-exon-sc0005136-1491911889:4226..4856TCONS_00044193-exon-sc0005136-1491911889:4226..4856Clytia hemisphaericaexon
TCONS_00044193-exon-sc0005136-1510915933:4226..4856TCONS_00044193-exon-sc0005136-1510915933:4226..4856Clytia hemisphaericaexon
TCONS_00044193-exon-sc0005136-1575043694:4226..4856TCONS_00044193-exon-sc0005136-1575043694:4226..4856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005136supercontigsc0005136:4226..4856 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0840705	0.081982	0	0.0931275	0.226747	0.268768	0	0.101189	0.0708446	0	0	0	0.0559126	0	0.143214	0.0512302	0.189334	0.129374	0.0893688	0.093518	0	0	0	0	0	0	0.115277	0	0.0933117	0.475349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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