TCONS_00044188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044188
Unique NameTCONS_00044188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044188 ID=TCONS_00044188|Name=TCONS_00044188|organism=Clytia hemisphaerica|type=transcript|length=360bp
gttttgtcaattttccaaAGTTTCATGTATTTGGAAAACAAGAGTTCAAA
TAGTTCTGTTGCAAGTGTTCCCATACAAGCACCTTATTTCCAAAAAGGAA
TGAATTCCACAGGTTAACCTTGTCTGATGAAAGTAACTTTgcattttagc
aaaaatttccTGAAAGGTATGTGATAGCACTCATTTATGTAATGTAAGTA
AGTATAGTTCTAGTTTTAAGATGAAAGATATCAGTATATacatctaaaaa
taaaatattataacTGTCATTaccgttgttactaaaagtggtaacggtag
gtaacgataggtaacgataggtaacgacaagtaacggtaggtaacgacag
gtaacgatAA
Run BLAST on NCBI

transcript from alignment at sc0005130:4..363

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044188 ID=TCONS_00044188|Name=TCONS_00044188|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0005130:4..363 (Clytia hemisphaerica)
TTatcgttacctgtcgttacctaccgttacttgtcgttacctatcgttac
ctatcgttacctaccgttaccacttttagtaacaacggtAATGACAgtta
taatattttatttttagatgtATATACTGATATCTTTCATCTTAAAACTA
GAACTATACTTACTTACATTACATAAATGAGTGCTATCACATACCTTTCA
ggaaatttttgctaaaatgcAAAGTTACTTTCATCAGACAAGGTTAACCT
GTGGAATTCATTCCTTTTTGGAAATAAGGTGCTTGTATGGGAACACTTGC
AACAGAACTATTTGAACTCTTGTTTTCCAAATACATGAAACTttggaaaa
ttgacaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027834XLOC_027834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044188-exon-sc0005130-1491911889:4..363TCONS_00044188-exon-sc0005130-1491911889:4..363Clytia hemisphaericaexon
TCONS_00044188-exon-sc0005130-1510915933:4..363TCONS_00044188-exon-sc0005130-1510915933:4..363Clytia hemisphaericaexon
TCONS_00044188-exon-sc0005130-1575043694:4..363TCONS_00044188-exon-sc0005130-1575043694:4..363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005130supercontigsc0005130:4..363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.601444	0.624492	0.798074	0	0.35253	0	2.10727	0.715844	0.197989	0.364905	1.19019	0.337081	0.602045	0	0	0	0	0.26158	0	0	0.45433	0.664818	0	0.244916	0	2.9531	0.322166	0	0.260778	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top