TCONS_00044181 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044181
Unique NameTCONS_00044181
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044181 ID=TCONS_00044181|Name=TCONS_00044181|organism=Clytia hemisphaerica|type=transcript|length=900bp
TTTTGAATTCCCTCTCGAATTGGTCGATCGAATGGAAATTATTACCACCT
GCTTCTCCATGGATGGGAGGCATATACGAATCCATGGTTAAGATTGCCAA
AAAGTGTTTGAAAACGGTTATCACTGAGAAATTGTTCGACGAAGAATGCT
TAAGAACATTCCTTGTGGAGGTCGAATCTTTCATGAACAGTCTCCCACTC
ACCTCAACAACTGATGACCCAGATGATATTGACGTCATCACACCAAGTCA
TTTTTTAACCGGTCAGGTATCTGTTCCTGAAGAGATTGTACCGGAATATG
AGTTAAGAGTTAGAAAAAAGTGGCGAAANTCACCTCAACAACTGATGACC
CAGATGATATTGACGTCATCACACCAAGTCATTTTTTAACCGGTCAGGTA
TCCGTTCCTGAAGAGATTGTACCGGAATATGAGTTAAGAGTTAGAAAAAA
GTGGCGAAAAGTGCAGGCTGCAACCTCGAAATTTTGGCAGCTTTGGTTGA
GTAATTATCTACCTCAACTTACGAAACGTCTCAAGTGGTTCGAAAACACC
CGCACGTTACGCGTAAATGACGTCGTTGTTTATATTGATAATACGGTCGA
GAGACAGAAATGGCCGATTGGAAGAATAATGAAAACATTTCCAGGAAACG
ATGGTATCGTGAGAAAagtagttttaaaaacaaaaaacggcgTCCACACA
TGCCCGGCGGCTAAATGTTACTTATTGGAAGGTGCCGATTAAGAACAGTC
CCAAATTCTGCCGGGGAGTGTTTTGGCTAATTAATGATGTTGCATTGGGT
AATTAGCATTTTAATGTTATGTGTTGTGCGTATCGTCATGTGTATTGTAT
CGTGCgtcttttgtctatttttaattagttttttactGTATAGGTTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00044181-protein

>TCONS_00044181-protein ID=TCONS_00044181-protein|Name=TCONS_00044181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
LNSLSNWSIEWKLLPPASPWMGGIYESMVKIAKKCLKTVITEKLFDEECL
RTFLVEVESFMNSLPLTSTTDDPDDIDVITPSHFLTGQVSVPEEIVPEYE
LRVRKKWRXSPQQLMTQMILTSSHQVIF
Run BLAST on NCBI

transcript from alignment at sc0005123:3986..4885

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044181 ID=TCONS_00044181|Name=TCONS_00044181|organism=Clytia hemisphaerica|type=transcript|length=900bp|location=Sequence derived from alignment at sc0005123:3986..4885 (Clytia hemisphaerica)
AAAAAACCTATACagtaaaaaactaattaaaaatagacaaaagacGCACG
ATACAATACACATGACGATACGCACAACACATAACATTAAAATGCTAATT
ACCCAATGCAACATCATTAATTAGCCAAAACACTCCCCGGCAGAATTTGG
GACTGTTCTTAATCGGCACCTTCCAATAAGTAACATTTAGCCGCCGGGCA
TGTGTGGAcgccgttttttgtttttaaaactactTTTCTCACGATACCAT
CGTTTCCTGGAAATGTTTTCATTATTCTTCCAATCGGCCATTTCTGTCTC
TCGACCGTATTATCAATATAAACAACGACGTCATTTACGCGTAACGTGCG
GGTGTTTTCGAACCACTTGAGACGTTTCGTAAGTTGAGGTAGATAATTAC
TCAACCAAAGCTGCCAAAATTTCGAGGTTGCAGCCTGCACTTTTCGCCAC
TTTTTTCTAACTCTTAACTCATATTCCGGTACAATCTCTTCAGGAACGGA
TACCTGACCGGTTAAAAAATGACTTGGTGTGATGACGTCAATATCATCTG
GGTCATCAGTTGTTGAGGTGANTTTCGCCACTTTTTTCTAACTCTTAACT
CATATTCCGGTACAATCTCTTCAGGAACAGATACCTGACCGGTTAAAAAA
TGACTTGGTGTGATGACGTCAATATCATCTGGGTCATCAGTTGTTGAGGT
GAGTGGGAGACTGTTCATGAAAGATTCGACCTCCACAAGGAATGTTCTTA
AGCATTCTTCGTCGAACAATTTCTCAGTGATAACCGTTTTCAAACACTTT
TTGGCAATCTTAACCATGGATTCGTATATGCCTCCCATCCATGGAGAAGC
AGGTGGTAATAATTTCCATTCGATCGACCAATTCGAGAGGGAATTCAAAA

Coding sequence (CDS) from alignment at sc0005123:3986..4885

>TCONS_00044181 ID=TCONS_00044181|Name=TCONS_00044181|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0005123:3986..4885 (Clytia hemisphaerica)
TTAAAAAATGACTTGGTGTGATGACGTCAATATCATCTGGGTCATCAGTT
GTTGAGGTGANTTTCGCCACTTTTTTCTAACTCTTAACTCATATTCCGGT
ACAATCTCTTCAGGAACAGATACCTGACCGGTTAAAAAATGACTTGGTGT
GATGACGTCAATATCATCTGGGTCATCAGTTGTTGAGGTGAGTGGGAGAC
TGTTCATGAAAGATTCGACCTCCACAAGGAATGTTCTTAAGCATTCTTCG
TCGAACAATTTCTCAGTGATAACCGTTTTCAAACACTTTTTGGCAATCTT
AACCATGGATTCGTATATGCCTCCCATCCATGGAGAAGCAGGTGGTAATA
ATTTCCATTCGATCGACCAATTCGAGAGGGAATTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027827XLOC_027827Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044181-proteinTCONS_00044181-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044181-exon-sc0005123-1491911889:3986..4885TCONS_00044181-exon-sc0005123-1491911889:3986..4885Clytia hemisphaericaexon
TCONS_00044181-exon-sc0005123-1510915933:3986..4885TCONS_00044181-exon-sc0005123-1510915933:3986..4885Clytia hemisphaericaexon
TCONS_00044181-exon-sc0005123-1575043694:3986..4885TCONS_00044181-exon-sc0005123-1575043694:3986..4885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005123supercontigsc0005123:3986..4885 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.667454	0.851141	0.813858	0.625612	5.26212	4.21291	2.1783	2.96625	0.778778	1.92928	0.572186	1.06001	0.37561	0.283691	0.262386	0.250294	0.192714	0.513565	0.0545783	0.171337	0.0992819	0.0726393	0.353211	0.642239	1.04736	1.42672	0.352005	0.375669	0.398904	0.2903
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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